Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07577 ATGGATCCTCCTGCTGAAGATTCGCCTCAATACATACATATATATCAGAACGATTTCTTTATGCGAAGGCATAAGAAGCAGAAGGAGGAAGATATTGCTATATGTGAATGCAGGTATAATGATGATGACCCTGATAGTGCATGTGGGGATGGGTGCCTGAATGTATTAACCAGCACTGAATGCACCCCTGGTTATTGTCCTTGTGGTATCTTTTGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACGAAGTTATTTAAAACTGAAGGCCGGGGGTGGGGTCTTTTAGCTGATGAGGATATTAAGGCTGGACAATTTGTCATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGTAGATCCCAGGCTTATGAAATTCAAGGTCTTAAGGATGCATTTATCATTTCCCTTAATGCATCAGAATCTATTGATGCAACCAGAAAAGGAAGCCTTGCTAGATTTATAAATCATTCCTGTCAACCAAACTGTGAGACAAGGAAATGGAATGTCTTGGGGGAAATAAGAGTTGGAATATTTTCAAAGCACGATATTCCTATTGGAACTGAATTGGCATATGACTATAATTTTGAATGGTATGGAGGTGCAAAGGTTCGCTGCCTTTGTGGTGCATTCAAATGTTCTGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAGGCAAGTTTGAGTTAA 705 0.3915 MDPPAEDSPQYIHIYQNDFFMRRHKKQKEEDIAICECRYNDDDPDSACGDGCLNVLTSTECTPGYCPCGIFCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDIKAGQFVIEYCGEVISWKEAKRRSQAYEIQGLKDAFIISLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFSKHDIPIGTELAYDYNFEWYGGAKVRCLCGAFKCSGFLGAKSRGFQASLS. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07577 234 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0042054
Seca7g07577 234 Gene3D SET domain 2 232 IPR046341 -
Seca7g07577 234 Pfam SET domain 94 200 IPR001214 GO:0005515
Seca7g07577 234 SMART set_7 83 206 IPR001214 GO:0005515
Seca7g07577 234 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Seca7g07577 234 SUPERFAMILY SET domain 27 220 IPR046341 -
Seca7g07577 234 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Seca7g07577 234 PANTHER SET DOMAIN PROTEINS 8 229 - -
Seca7g07577 234 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0042054
Seca7g07577 234 FunFam Histone-lysine N-methyltransferase 1 233 - -
Seca7g07577 234 Pfam AWS domain 42 80 IPR006560 GO:0005634|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07577 Seca-Chr7 179456634 179459550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07577 65 223 C2H2 Transcription Factor Family AT2G23740 33.889 4.62e-22 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca7g07577 SET 4.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07577 - - lang:109335575 452.981