Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca7g07577 | ATGGATCCTCCTGCTGAAGATTCGCCTCAATACATACATATATATCAGAACGATTTCTTTATGCGAAGGCATAAGAAGCAGAAGGAGGAAGATATTGCTATATGTGAATGCAGGTATAATGATGATGACCCTGATAGTGCATGTGGGGATGGGTGCCTGAATGTATTAACCAGCACTGAATGCACCCCTGGTTATTGTCCTTGTGGTATCTTTTGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACGAAGTTATTTAAAACTGAAGGCCGGGGGTGGGGTCTTTTAGCTGATGAGGATATTAAGGCTGGACAATTTGTCATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGTAGATCCCAGGCTTATGAAATTCAAGGTCTTAAGGATGCATTTATCATTTCCCTTAATGCATCAGAATCTATTGATGCAACCAGAAAAGGAAGCCTTGCTAGATTTATAAATCATTCCTGTCAACCAAACTGTGAGACAAGGAAATGGAATGTCTTGGGGGAAATAAGAGTTGGAATATTTTCAAAGCACGATATTCCTATTGGAACTGAATTGGCATATGACTATAATTTTGAATGGTATGGAGGTGCAAAGGTTCGCTGCCTTTGTGGTGCATTCAAATGTTCTGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAGGCAAGTTTGAGTTAA | 705 | 0.3915 | MDPPAEDSPQYIHIYQNDFFMRRHKKQKEEDIAICECRYNDDDPDSACGDGCLNVLTSTECTPGYCPCGIFCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDIKAGQFVIEYCGEVISWKEAKRRSQAYEIQGLKDAFIISLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFSKHDIPIGTELAYDYNFEWYGGAKVRCLCGAFKCSGFLGAKSRGFQASLS. | 235 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca7g07577 | 234 | ProSiteProfiles | AWS domain profile. | 30 | 81 | IPR006560 | GO:0005634|GO:0042054 | |
Seca7g07577 | 234 | Gene3D | SET domain | 2 | 232 | IPR046341 | - | |
Seca7g07577 | 234 | Pfam | SET domain | 94 | 200 | IPR001214 | GO:0005515 | |
Seca7g07577 | 234 | SMART | set_7 | 83 | 206 | IPR001214 | GO:0005515 | |
Seca7g07577 | 234 | ProSiteProfiles | Post-SET domain profile. | 207 | 223 | IPR003616 | - | |
Seca7g07577 | 234 | SUPERFAMILY | SET domain | 27 | 220 | IPR046341 | - | |
Seca7g07577 | 234 | ProSiteProfiles | SET domain profile. | 83 | 200 | IPR001214 | GO:0005515 | |
Seca7g07577 | 234 | PANTHER | SET DOMAIN PROTEINS | 8 | 229 | - | - | |
Seca7g07577 | 234 | SMART | shorttest3 | 30 | 82 | IPR006560 | GO:0005634|GO:0042054 | |
Seca7g07577 | 234 | FunFam | Histone-lysine N-methyltransferase | 1 | 233 | - | - | |
Seca7g07577 | 234 | Pfam | AWS domain | 42 | 80 | IPR006560 | GO:0005634|GO:0042054 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca7g07577 | Seca-Chr7 | 179456634 | 179459550 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca7g07577 | 65 | 223 | C2H2 Transcription Factor Family | AT2G23740 | 33.889 | 4.62e-22 | 92.8 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SET | Seca7g07577 | SET | 4.9e-20 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca7g07577 | - | - | lang:109335575 | 452.981 |