Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07575 ATGGATCACGGCCCTCAAGCTCTCCTCGCCGCCGTCGGCAGCTTCTTCGTCGTCACTCTCCTCGCCGCCGTCATCATCCTTGTCTGCCAGCACCGCAAATCCACCAAAGCCCGCAATAACCAAATCCGAACCCGAACCCGACCCCTTGGTAACCCTAACCCTAGCATCTCCCTCTCCGTGGTCGACGCCAGCTACTCCTTCGACCAAAAACTCAAGATCTCGATGGAGGAGCTTGCCCGCGCGACGGAGAATTTCTCCCCTCGCCTCATCGTCGGCGACGGCAGCTTCGGCCTTGTCTACAAGGCCCGCCTCTCCTCCGGCACCGTCGTCGCCGTCAAGAAACTCTCGCCGGACGCCTTCCAAGGCTTCCGTGAATTCGCGGCGGAGATGGAAACCCTAAGCAAGCTCCGCCACCACAACATCGTCAAGATCCTCGGTTACTGGGCCTCCGGACCTGAACGGTTACTCGTCTACGAGTTCATCGAAAAAGGGAACCTCGATCAGTGGCTCCACGAAACCTCTCCCGCCGAACCCAACGACGACGTTTCCACCGACCTCCATCGCTTCCCCCTGTCTTGGGAAACCAGGGTCAACATAATTCGTGGCGTGGCCCATGGGCTTTGCTACTTGCACGGGCTGGAGAAGCCCATTATTCATCGCGACATCAAAGCCAGCAATGTCTTGTTGGACTCTAACTTTCAGGCCCATATTGCTGATTTTGGGCTTGCCCGCAGGATTGATGCTTCACATTCCCACGTGTCAACGCAATTTGCCGGTACCATTGGTTACATGCCCCCGGAGTATAGGGATGGGGTTATTGTAGCCAACAGGAAGGTTGATGTGTATAGTTTTGGGGTGTTGATGATCGAAACGGCATCAGGGAACCGGCCCAATTTGCCAGTGAGAATGGACCAAAATGACATTGGGCTGGTCCAATGGGCCCGGAAGATGAAAGAGGAAAACGCAGAGATGAAAATGCTGGATGTGAATATTTCAAGAGAAGGGTTGAGGGAGGATAGTGTTAAGGATTATATACGTATTGCTTGTATGTGTACTGGTGAGTTACAGAAGGAAAGGCCCGAAATGCCCGAAGTTGTCAAATTGTTGGACTCAATGCCGCTTTGA 1125 0.5404 MDHGPQALLAAVGSFFVVTLLAAVIILVCQHRKSTKARNNQIRTRTRPLGNPNPSISLSVVDASYSFDQKLKISMEELARATENFSPRLIVGDGSFGLVYKARLSSGTVVAVKKLSPDAFQGFREFAAEMETLSKLRHHNIVKILGYWASGPERLLVYEFIEKGNLDQWLHETSPAEPNDDVSTDLHRFPLSWETRVNIIRGVAHGLCYLHGLEKPIIHRDIKASNVLLDSNFQAHIADFGLARRIDASHSHVSTQFAGTIGYMPPEYRDGVIVANRKVDVYSFGVLMIETASGNRPNLPVRMDQNDIGLVQWARKMKEENAEMKMLDVNISREGLREDSVKDYIRIACMCTGELQKERPEMPEVVKLLDSMPL. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07575 374 Gene3D Transferase(Phosphotransferase) domain 1 161 373 - -
Seca7g07575 374 ProSiteProfiles Protein kinase domain profile. 85 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07575 374 Gene3D Phosphorylase Kinase; domain 1 55 160 - -
Seca7g07575 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Seca7g07575 374 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 371 - -
Seca7g07575 374 Pfam Protein tyrosine and serine/threonine kinase 91 368 IPR001245 GO:0004672|GO:0006468
Seca7g07575 374 CDD STKc_IRAK 91 372 - -
Seca7g07575 374 SMART serkin_6 85 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07575 374 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Seca7g07575 374 FunFam Phytosulfokine receptor 2 161 373 - -
Seca7g07575 374 FunFam Phytosulfokine receptor 2 45 160 - -
Seca7g07575 374 SUPERFAMILY Protein kinase-like (PK-like) 64 369 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07575 Seca-Chr7 179445571 179446695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07575 67 369 Receptor kinase-like Gene Family AT5G07280 43.791 1.62e-69 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Seca7g07575 PK_Tyr_Ser-Thr 2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07575 - - mtr:11410577 570.081