Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07543 ATGGCCTCCTCCCAGTCCCAGCATCGCTGCGTTTTTGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATTGAAATCTGCAAGGAGGTTGGTCCTGTTGTCTCATTCAGATTAGTTATTGATCGAGAAACCGGGAAACCAAAAGGCTATGGGTTCTGTGAGTATAAGGATGAAGAGACAGCTTTAAGTGCTCGTCGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGTGTTGATTTTGCTGAAAATGATAAAGGGACTGATAGGAATCGAGAACAGGGTCGCGGTGGGCCTGGAATGACAGCAAATGTTGACCCTCAGAAACAAGTAGGCATCTCAGCTGTCCATGGGGAAGCTGTTCAACATCAACCTATTGGTCTTCATATCGCCATAACAGCCGCGGCTCTCATGACAGCAGCTCTAGGTGGTCCTCAGTCAGGCATCCAGTCAAATCAAAATGGATTGCAAAGTCAGTCAGCATTGGCACATGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGCTAACTGAGATTATCTCTGAGCTCAAGGGAATGGCTACACAAAACAAGGAGCTGGCTCGCCAGCTGTTGCTTTCAAGGCCACAGTTGCCTAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACCTCCCAAGTGTTACAAATGCCAAACCTTAGACTGGTTTCAGATCAAACCTCACAGTCTTTATTGAATGAAGGCCACCTGGGTCAGCCAGCATTGGTTCAAACTTTGTCTGGCCTACCTCCTTTTGGACAGAGCAAGTTGCAGTCTGGTCTGACACCTTACATTCAAGAAGGTCAAGTCAGCACCATACCTCATAATCCTTTAGCTCCTAATCAATTAACTGCACATCCAAAGCCTCCAGTGCAGCCTCGAATTCCCCTTCAACATCATCCAAGCAACCCTGTTGTACAGCTGGGAACAATGTCAGGGCAGTCTAATTTAATGCTTCCTTCTGTGCGTCCATTGTCATTGGGCAGTTTGTCTGTCAGACCACCAATTCAATTGGCAACTACGACTGCTTTGAACCAGCAAATGCACGCCTCATTGCCACAGCATCCAGTACGTGTTGGAAGCTCAACTATTGGACATAATATTCAAATGGTTCGTCCAGATGCAAGCTTTCAGCCTGGGCCCTCCATATCATCAGGTATTTCTCAGTTAAGTAGTAAGGAAGGTGATAGATCTTTCAAACATGCCTTCTGGAGTTGA 1260 0.4619 MASSQSQHRCVFVGNIPYDATEEQLIEICKEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNREQGRGGPGMTANVDPQKQVGISAVHGEAVQHQPIGLHIAITAAALMTAALGGPQSGIQSNQNGLQSQSALAHDPLTLHLAKMSRSQLTEIISELKGMATQNKELARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRLVSDQTSQSLLNEGHLGQPALVQTLSGLPPFGQSKLQSGLTPYIQEGQVSTIPHNPLAPNQLTAHPKPPVQPRIPLQHHPSNPVVQLGTMSGQSNLMLPSVRPLSLGSLSVRPPIQLATTTALNQQMHASLPQHPVRVGSSTIGHNIQMVRPDASFQPGPSISSGISQLSSKEGDRSFKHAFWS. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07543 419 FunFam Cleavage stimulating factor 64 2 118 - -
Seca7g07543 419 SMART rrm1_1 10 83 IPR000504 GO:0003723
Seca7g07543 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Seca7g07543 419 CDD RRM_CSTF2_RNA15_like 9 85 - -
Seca7g07543 419 FunFam Cleavage stimulating factor 64 157 232 - -
Seca7g07543 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Seca7g07543 419 MobiDBLite consensus disorder prediction 86 109 - -
Seca7g07543 419 SUPERFAMILY RNA-binding domain, RBD 5 104 IPR035979 GO:0003676
Seca7g07543 419 Gene3D - 1 114 IPR012677 -
Seca7g07543 419 MobiDBLite consensus disorder prediction 386 405 - -
Seca7g07543 419 Gene3D - 150 232 - -
Seca7g07543 419 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 368 - -
Seca7g07543 419 Pfam Hinge domain of cleavage stimulation factor subunit 2 163 230 IPR025742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07543 Seca-Chr7 178994125 179002099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07543 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.24e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07543 K14407 - gmx:100794399 669.848