Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07536 ATGGAAAACCTTCCCCAATTGATTTACAAAAATCCTATTAGGAGAACCTCTAGGCGATCTACAATGTATCTTGGAGTTAGAAAAAGGCCATGGGGAAGATATGCTGCTGAGATTAGGAACCCATATACCAAAGAGAGACATTGGTTAGGCACATTTGACACTGCTGAAGAAGCTGCTATAGCTTATGATCTTTCATCTATCAAGATTTGTGGCATTCATAATGCTAGAACTAATTTTCATTACCCTTTTATGATATCTCTTCCACCACCTCCTATGTCATTGCCTCCTCCACTTCCTCCACCATCCCCTGAGTTGGATCAAAGTGTTCAAGTTTGTCCAGAGATGAATGCTGCTTATGCTTATAATGGTGATGATGAATCTCTAGTTATTGCTTCCATCTTGCAAAGTTTTTCTAATTCTGGTAACTGTTCTTTTTAG 438 0.3881 MENLPQLIYKNPIRRTSRRSTMYLGVRKRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAIAYDLSSIKICGIHNARTNFHYPFMISLPPPPMSLPPPLPPPSPELDQSVQVCPEMNAAYAYNGDDESLVIASILQSFSNSGNCSF. 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07536 145 Pfam AP2 domain 24 69 IPR001471 GO:0003700|GO:0006355
Seca7g07536 145 CDD AP2 23 79 IPR001471 GO:0003700|GO:0006355
Seca7g07536 145 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Seca7g07536 145 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Seca7g07536 145 ProSiteProfiles AP2/ERF domain profile. 22 80 IPR001471 GO:0003700|GO:0006355
Seca7g07536 145 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 103 - -
Seca7g07536 145 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
Seca7g07536 145 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Seca7g07536 145 SMART rav1_2 22 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07536 Seca-Chr7 178939355 178939792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07536 23 105 AP2-EREBP Transcription Factor Family AT1G12890 63.095 9.89e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g07536 AP2 3.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07536 - - gmx:100816937 226.868