Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07533 ATGTCCAAGGATAGTCGGCTTAACAACAACAGCTTGAGTGGTCCTATTCCCATGACGCTGACTAATATTTCTTCTCTCCAAGTTCTGGATTTGTCTAATAACCGTCTCTCAGGCGTGGTTCCCGATAATGGATCCTTCTCATTATTTACTCCTATCAGTTTTGCAAACAACTTGGATCTCTGTGGACCAGTCACTGGGCACCCTTGTCCAGGCTCTCCTCCATTTTCTCCTCCTCCCCCTTTTGTCCCTCCGCCCCCAATATCTGTGCCAGGAGGTAATAGTGCTACTGGGGCAATAGCTGGAGGAGTTGCTGCAGGCGCTGCTCTGTTATTTGCTGCACCTGCAATTGCATTTGCATGGTGGCGTCGAAGGAAACCACAGGAATTTTTCTTTGATGTGCCTGCTGAAGAGGATCCTGAAGTTCATCTAGGGCAGCTTAAGAGGTTCTCATTACGAGAACTGCAAGTTGCAACGGACAGTTTCAGCAATAAGAACATTCTTGGGAGGGGAGGATTTGGTAAGGTGTACAAAGGACGCTTGGCAGATGGTTCATTGGTTGCTGTCAAAAGATTGAAAGAGGAGCGCACACCTGGTGGGGAGCTTCAGTTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTGCACAGAAATCTCCTCCGTTTACGTGGGTTCTGTATGACACCAACGGAAAGGTTACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCCTCCTGCTTAAGAGAGCGTCCTGCACATCAAGAACCCCTAGATTGGCCAACAAGGAAAAGAATAGCTTTGGGTTCAGCAAGGGGTCTTTCATATTTGCATGATCATTGTGACCCAAAGATTATTCATCGTGATGTGAAAGCTGCAAACATATTGTTGGATGAGGAGTTTGAGGCTGTTGTTGGGGACTTTGGTTTGGCAAAACTAATGGATTATAAGGACACCCATGTAAAAGGACTTCTGAAAGAGAAAAAGCTTGAAATGTTGGTTGATCCTGATCTACACAACAACTATATAGAAGCAGAGGTAGAACAGTTAATCCAGGTTGCACTACTCTGCACACAAGGTTCCCCAATGGACCGACCTAAGATGTCGGAAGTGGTGAGAATGCTAGAAGGTGATGGCTTGGCAGAAAGATGGGATGAGTGGCAAAAAGTGGAAGTTCTCCGCCAGGAAGTTGAGCTGGCCCCTCATCCCAATTCTGATTGGATTGTTGACTCCACTGAAAATCTACATGCAGTTGAATTATCTGGTCCAAGGTGA 1272 0.4615 MSKDSRLNNNSLSGPIPMTLTNISSLQVLDLSNNRLSGVVPDNGSFSLFTPISFANNLDLCGPVTGHPCPGSPPFSPPPPFVPPPPISVPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPAHQEPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVKGLLKEKKLEMLVDPDLHNNYIEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHPNSDWIVDSTENLHAVELSGPR. 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07533 423 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 385 - -
Seca7g07533 423 ProSitePatterns Protein kinases ATP-binding region signature. 167 189 IPR017441 GO:0005524
Seca7g07533 423 Gene3D Ribonuclease Inhibitor 3 73 IPR032675 -
Seca7g07533 423 Gene3D Phosphorylase Kinase; domain 1 130 237 - -
Seca7g07533 423 ProSiteProfiles Leucine-rich repeat profile. 25 46 IPR001611 GO:0005515
Seca7g07533 423 Gene3D Transferase(Phosphotransferase) domain 1 238 320 - -
Seca7g07533 423 Gene3D Transferase(Phosphotransferase) domain 1 321 394 - -
Seca7g07533 423 SUPERFAMILY Protein kinase-like (PK-like) 140 375 IPR011009 -
Seca7g07533 423 SMART serkin_6 161 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07533 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 284 296 IPR008271 GO:0004672|GO:0006468
Seca7g07533 423 FunFam Somatic embryogenesis receptor kinase 1 130 237 - -
Seca7g07533 423 Pfam Protein kinase domain 162 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07533 423 FunFam Os07g0541700 protein 238 325 - -
Seca7g07533 423 ProSiteProfiles Protein kinase domain profile. 161 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07533 423 SUPERFAMILY L domain-like 7 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07533 Seca-Chr7 178894823 178898713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07533 6 423 Receptor kinase-like Gene Family AT1G71830 71.784 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca7g07533 Pkinase 1.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07533 K13418 - gmx:100789884 544.273