Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07519 ATGGCCGGCAATTCTGCAACCGCCTCCTCCGCCCCTGCGTACTCTCGCGAGAAATTGAATTTCTCGCCTGATTTCCCCGCACGAATCCCTCTCACTTCCGATCAGGTCAAGTACTGCACCGAGGCGCTCACCTTGTTGAAGGACAAGCTCCGCACTCCTCACACCATCTCCCAAGAGTTCGCTCGCTTGCAGGCGAACAGGATAACGCCGAGTGAGATGGGGAGAAGATGCAACGTAGCTCTTGATGCTGTCAATGCGAGCAAAAATCGATATAGAGACGTGATACCATTTGACAAGAACAGGATTGTTCTCAAATCAAGTACAGATTATAGGCCTGCAGCACTGGGGTATATCAATGCAAGCTTTATCTCGACCTCCTCCCCTGGAACTGTGTCCCAGTTTATAGCTACTCAAGGACCATTGCCACACACTTATGAGGATTTCTGGGAAATGATTATCCAATATCACTGCCCTGCAATTGTGATGCTTACTAGATTGGTCGACAATTACAAGATGATAAAGTGTGGAGATTATTTTCAAGCTGAGGATGGACCTAGAGAATTTGGAAATGTCTCCATTACCAGTAAATGGATACAAACTACTGAATCTTTGCTGGTGCTGCGTCATTTAGAGGTCAACCATAGAGAGGCAGAAGATACAGCATTATCTGTTTTGCATATTCAATATCCTGAATGGCCTGACCATGGAGTTCCAAACAATACATTTTCTGTGCGTGAAATTTTGAAAAGATTATACCACTTACCACCAGAGCATGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGTAGAACGGGAACCTACTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGTGATATGTCTGCTGTAGATATTGCTAACACAATAGCTGTGTTCAGGTCCCAACGTATTGGAATGGTTCAGACCCAGGTAATTGGATTTGCTAATTTAATATTTAGTTATGATTAA 978 0.4448 MAGNSATASSAPAYSREKLNFSPDFPARIPLTSDQVKYCTEALTLLKDKLRTPHTISQEFARLQANRITPSEMGRRCNVALDAVNASKNRYRDVIPFDKNRIVLKSSTDYRPAALGYINASFISTSSPGTVSQFIATQGPLPHTYEDFWEMIIQYHCPAIVMLTRLVDNYKMIKCGDYFQAEDGPREFGNVSITSKWIQTTESLLVLRHLEVNHREAEDTALSVLHIQYPEWPDHGVPNNTFSVREILKRLYHLPPEHGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSAVDIANTIAVFRSQRIGMVQTQVIGFANLIFSYD. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07519 325 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 245 313 IPR000387 GO:0016311|GO:0016791
Seca7g07519 325 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 41 313 IPR029021 -
Seca7g07519 325 Gene3D Protein tyrosine phosphatase superfamily 32 324 IPR029021 -
Seca7g07519 325 PRINTS Protein tyrosine phosphatase signature 116 123 IPR000242 GO:0004725|GO:0006470
Seca7g07519 325 PRINTS Protein tyrosine phosphatase signature 260 278 IPR000242 GO:0004725|GO:0006470
Seca7g07519 325 PRINTS Protein tyrosine phosphatase signature 293 308 IPR000242 GO:0004725|GO:0006470
Seca7g07519 325 PRINTS Protein tyrosine phosphatase signature 134 154 IPR000242 GO:0004725|GO:0006470
Seca7g07519 325 PRINTS Protein tyrosine phosphatase signature 222 239 IPR000242 GO:0004725|GO:0006470
Seca7g07519 325 SMART ptp_7 223 317 IPR003595 -
Seca7g07519 325 Pfam Protein-tyrosine phosphatase 85 313 IPR000242 GO:0004725|GO:0006470
Seca7g07519 325 CDD PTPc_plant_PTP1 117 313 - -
Seca7g07519 325 FunFam Tyrosine-protein phosphatase non-receptor type 12 33 317 - -
Seca7g07519 325 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 47 313 - -
Seca7g07519 325 ProSiteProfiles PTP type protein phosphatase domain profile. 56 325 IPR000242 GO:0004725|GO:0006470
Seca7g07519 325 SMART PTPc_3 55 320 IPR000242 GO:0004725|GO:0006470
Seca7g07519 325 ProSitePatterns Tyrosine specific protein phosphatases active site. 263 273 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07519 Seca-Chr7 178768284 178772840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07519 34 312 Protein tyrosine phosphatase (PTP) family AT1G71860 67.384 8.79e-148 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07519 - - gmx:548044 511.531