Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07497 ATGCAGAGGTACGGTTTTGCATCAAAATCTTCTTCAAAATGCAATACTGTTTTGCCATATCAAACCCCAAGGCTGAGGGACCACTACCTTCTTGGGAAGAAGCTTGGGCAAGGCCAATTTGGCACCACATACCTCTGCACCCACAAAGCCACAGGGAAACTCTATGCCTGCAAATCCATCCCAAAGAGGAAGCTTTTGTGCCAAGAGGATTATGATGATGTATGGAGAGAGATTCAGATCATGCACCATTTGTCAGAGCACCCAAATGTGGTCCAGATACAGGGAACCTATGAGGATTCTGTGTTTGTGCACCTGGTCATGGAGCTCTGTGCTGGGGGTGAACTTTTTGATAGGATAATTCAGAAGGGGCATTACAGCGAGAAAGAGGCTGTAAAGTTGATAAAGACCATTGTTGGGGTGGTGGAGGCATGTCACTCTCTTGGGGTCATGCATAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATACCCCTGGTGAAGATGCTAAGATGAAGGCCACAGATTTTGGCCTCTCTGTGTTCTACAAGCCAGGACAAGCCTTTCATGATGTAGTTGGAAGTCCCTACTATGTTGCCCCTGAGGTGTTGTGCAAGCAATATGGACCAGAAGTGGATGTATGGAGTGCTGGTGTTATCCTATACATCTTGTTGAGTGGGGTCCCACCTTTCTGGGCTGGTAATGATCCTAATATGGATTGTGATTCTCTTGGACTTGCACTTGTTAAGCTTTTCTTGCTACATTCACCTTTTCTATTACCTTCAGAAACAGAATCAGGAATTTTCAGGCAGATTTTACATGGAGAGCTTGATTTTGTATCTGAACCATGGCCAAGTATCTCAGAAAGTGCTAAAGATTTGGTAAAACAGATGTTGGAAAGGGACCCTACGAAAAGACCTTCTGCTCATGAAGTCTTATGTCACCCTTGGATTGTTGATGATACAGTTGCCCCTGACAAACCTCTGGATTCAGCTGTTTTGACACGCCTAAAGCATTTTTCAGCAATGAATAAACTCAAGAAGATGGCACTGCGTGTCATAGCAGAAAGACTTTCAGAGGAAGAAATAGGTGGGTTAAAAGAGTTATTCAAGATGATTGACACAGACAACAGCGGGACCATAACTTTTGAGGAACTCAAGGATGGTTTGAAAAGTGTGGGCTCTAATCTCATGGAATCTGAAATTAAATCCCTTATGGATGCGGCTGATATAGACAACAATGGAACAATAGACTATGGTGAATTTCTTGCTGCTACTCTGCACTTGAATAAGATGGAAAGAGAGGAGAATTTGGTTGCAGCTTTTGCCTATTTTGATAAAGATGGTAGTGGTTACATCACCATTGATGAGCTTCAACAGGCTAGTAAAGACTTCGGCCTAGGTGATGTACATCTGGATGAAATGATCAAAGAGATTGATCAAGACAATGATGGAAGAATTGATTATGGGGAGTTTGTAGCGATGATGAAAAAGGGCGATGTAGATGCTATTGGAAGGAGCAGAACCATGAAAGGCAATTTGAACTTCAATATTGCAGATGCATTTGGAGTGAAAGAATCTTCTTGA 1581 0.4276 MQRYGFASKSSSKCNTVLPYQTPRLRDHYLLGKKLGQGQFGTTYLCTHKATGKLYACKSIPKRKLLCQEDYDDVWREIQIMHHLSEHPNVVQIQGTYEDSVFVHLVMELCAGGELFDRIIQKGHYSEKEAVKLIKTIVGVVEACHSLGVMHRDLKPENFLFDTPGEDAKMKATDFGLSVFYKPGQAFHDVVGSPYYVAPEVLCKQYGPEVDVWSAGVILYILLSGVPPFWAGNDPNMDCDSLGLALVKLFLLHSPFLLPSETESGIFRQILHGELDFVSEPWPSISESAKDLVKQMLERDPTKRPSAHEVLCHPWIVDDTVAPDKPLDSAVLTRLKHFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKDGLKSVGSNLMESEIKSLMDAADIDNNGTIDYGEFLAATLHLNKMEREENLVAAFAYFDKDGSGYITIDELQQASKDFGLGDVHLDEMIKEIDQDNDGRIDYGEFVAMMKKGDVDAIGRSRTMKGNLNFNIADAFGVKESS. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07497 526 SMART serkin_6 29 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07497 526 CDD STKc_CAMK 28 315 - -
Seca7g07497 526 ProSiteProfiles EF-hand calcium-binding domain profile. 395 430 IPR002048 GO:0005509
Seca7g07497 526 Gene3D - 324 499 - -
Seca7g07497 526 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Seca7g07497 526 Pfam EF-hand domain pair 364 424 IPR002048 GO:0005509
Seca7g07497 526 Pfam EF-hand domain pair 434 495 IPR002048 GO:0005509
Seca7g07497 526 ProSitePatterns EF-hand calcium-binding domain. 408 420 IPR018247 -
Seca7g07497 526 ProSiteProfiles EF-hand calcium-binding domain profile. 359 394 IPR002048 GO:0005509
Seca7g07497 526 FunFam Calcium-dependent protein kinase 1 31 114 - -
Seca7g07497 526 SUPERFAMILY Protein kinase-like (PK-like) 21 328 IPR011009 -
Seca7g07497 526 FunFam Calcium-dependent protein kinase 1 324 498 - -
Seca7g07497 526 ProSitePatterns EF-hand calcium-binding domain. 478 490 IPR018247 -
Seca7g07497 526 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Seca7g07497 526 FunFam CDPK-related kinase 3 21 189 - -
Seca7g07497 526 ProSiteProfiles Protein kinase domain profile. 29 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07497 526 Pfam Protein kinase domain 31 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07497 526 ProSitePatterns EF-hand calcium-binding domain. 444 456 IPR018247 -
Seca7g07497 526 CDD EFh 364 423 IPR002048 GO:0005509
Seca7g07497 526 ProSitePatterns EF-hand calcium-binding domain. 372 384 IPR018247 -
Seca7g07497 526 ProSiteProfiles EF-hand calcium-binding domain profile. 469 500 IPR002048 GO:0005509
Seca7g07497 526 SMART efh_1 363 391 IPR002048 GO:0005509
Seca7g07497 526 SMART efh_1 435 463 IPR002048 GO:0005509
Seca7g07497 526 SMART efh_1 399 427 IPR002048 GO:0005509
Seca7g07497 526 SMART efh_1 469 497 IPR002048 GO:0005509
Seca7g07497 526 SUPERFAMILY EF-hand 355 495 IPR011992 -
Seca7g07497 526 Gene3D Phosphorylase Kinase; domain 1 30 114 - -
Seca7g07497 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Seca7g07497 526 Gene3D Transferase(Phosphotransferase) domain 1 115 323 - -
Seca7g07497 526 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07497 Seca-Chr7 178477542 178482286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07497 15 522 EF-hand Containing Proteins AT1G35670 79.528 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca7g07497 Pkinase 6.8e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07497 K13412 - gmx:547887 905.205