Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07485 ATGCTACTCAGCACCAATCTGGTATATTCATCAGTCCTCAATGCTGCTATTGAGCTCAATTTATTTGACATCATAGCTAAGGCAACCCCACCTGGTTCTTTCATCTCATCCTCTCAAATTGCCTCTAAGATGCCATTGCAACACCAACACAAAGACTTGCCCAATAGGCTTGACCGCATGCTCCGTATGCTTGTCAGTTACAACATTCTCACTTTTGCCACTCGCACCACTCAGAATGGCACCACCGAGAGAGTTTATGGCCTTTCACAAGTTGGAAAACACTTTGTCCCTGATCCAAATAAGGGCAACATGGCTTCATTCGTTTCATATCTCTCTCAACCAGCACTGTTACAAGTTTGGTTGAACTTCAAGGAAGCTGTGATTAATGAGGACATCGACCTGTTCAAGAAAATTTATGGAGTAAGTATGTATGAGTACATGGAAAAGGATCCAAAACTGAGCCACATTTTTAACAGAGCTATGGCCGATATGTCTACAAAAGTGATGGAAAAAGTACTTGACACATATACTGGATTTGAGGGAATATCAACATTGGTTGATGTAGGAGGTGGGAATGGTCAATTTCTCAAAACCATAATCTCCAGGTACCCTTTAATAAAGGGAGTTAATTTTGATCTCCCCCATGTCATTCAGCAAGCACCATCTCTTCCAGGGATTGAGCATGTTGGAGGAGATATGTTTGCAAATGTTCCACAGGGTGACGCCATGTTACTAAAGAGTATATGCCATAATTGGTCGGATGAAAAATGCATAGAATTTTTAAGCAATTGTCACAAAGCATTGTCGCCAAATGGGAAGGTTATTATTATGGAGTTCATAACACCTGAAGAACCAGAGCCAACTGAAGCATCCCAGCTTCTTACCACTATTGACAACCTCATGTTTTTCACAGTTGGTGGAAGGGAAAGAACTCAGAAACAATATGAGAATTTGTGCAAGTTATCTGGATTTTCTAAATTTCATGTTGCTTGTTTGGCCTTTTCTACTTTCGGAGTGATGGAATTCTTCAACAAGGACATAACTTGCTCTGAAAAAACAGAGGATGGTGCTCACCTATCTGCAATGCTACTCAGCACCAATCTGGTATATTCATCAGTCCTCAATGCTGCTATTGAGCTCAATTTATTTGACATCATAGCTAAGGCAACCCCACCTGGTTCTTTCATCTCATCCTCCCAAATTGCCTCTAAGATGCCATTGCAAAACCAACACAAAGACTTGCCCAATAGGCTTGACCGCATGCTCCGTATGCTTGCCAGTTACAACATTCTCACTTTTGCCACTCGGCCCACTGAGAATGGCACCACCGAGAGAGTTTATGGCCTCTCACAAGTTGGAAAACACTTTGTCCCTGATGACACTAAGGGCAACAATGCTTCATTCGTATCATATCTCTCTTATCCAGCACTGTTACAAGAAGCTGTGATTAATGAAGACATTGACCTGTTCAAGAAACTTCATGGAGTAACTGTGTACGAGTACATGGACAAGGATCCTAAACTTAGCTACATTTTTAACAAGGCTATGGCCGATATGTCTACAAAAGTGATGGAAAAAGTACTTGACACATATACTGGATTTGAGGGAATATCAACATTGGTTGATGTAGGAGGTGGGAATGGTCAATTTCTCAAAACCATAATCTCCAGGTACCCTTTAATAAAGGGAATTAATTTTGATCTGCCCCATGCCATTCAAAAAGCACCATCTCTTCCAGGGATTGAGCATGTTGGAGGAGATATGTTTGTAAGTGTTCCACATGGTGACGCCATGTTACTAAAGAGTATATGCCATAATTGGTCAGATGAAAAATGCATAGAATTTTTAAGCAATTGTCACAAAGCATTGTCGCCAAATGGGAAGGTTATTATTATGGAGTTCATAACACCTGAAGAACCAGAGCCAACGGAAGCATCCCAGCTTCTTTCCACCATTGACAACCTCATGTTTATCACAGTTGGTGGAAGGGAAAGAACACAGAAACAATTTGAGAATTTGTGCAAGTTATCTGGATTTTCTAAATTTAATGTTGCTTGTTTGGCCTTTTCTAGTTTCGGAGTGATGGAGTTTTATAAATGA 2100 0.4067 MLLSTNLVYSSVLNAAIELNLFDIIAKATPPGSFISSSQIASKMPLQHQHKDLPNRLDRMLRMLVSYNILTFATRTTQNGTTERVYGLSQVGKHFVPDPNKGNMASFVSYLSQPALLQVWLNFKEAVINEDIDLFKKIYGVSMYEYMEKDPKLSHIFNRAMADMSTKVMEKVLDTYTGFEGISTLVDVGGGNGQFLKTIISRYPLIKGVNFDLPHVIQQAPSLPGIEHVGGDMFANVPQGDAMLLKSICHNWSDEKCIEFLSNCHKALSPNGKVIIMEFITPEEPEPTEASQLLTTIDNLMFFTVGGRERTQKQYENLCKLSGFSKFHVACLAFSTFGVMEFFNKDITCSEKTEDGAHLSAMLLSTNLVYSSVLNAAIELNLFDIIAKATPPGSFISSSQIASKMPLQNQHKDLPNRLDRMLRMLASYNILTFATRPTENGTTERVYGLSQVGKHFVPDDTKGNNASFVSYLSYPALLQEAVINEDIDLFKKLHGVTVYEYMDKDPKLSYIFNKAMADMSTKVMEKVLDTYTGFEGISTLVDVGGGNGQFLKTIISRYPLIKGINFDLPHAIQKAPSLPGIEHVGGDMFVSVPHGDAMLLKSICHNWSDEKCIEFLSNCHKALSPNGKVIIMEFITPEEPEPTEASQLLSTIDNLMFITVGGRERTQKQFENLCKLSGFSKFNVACLAFSSFGVMEFYK. 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07485 699 PANTHER O-METHYLTRANSFERASE 5 327 IPR016461 GO:0008168
Seca7g07485 699 Pfam Dimerisation domain 12 65 IPR012967 GO:0046983
Seca7g07485 699 Pfam Dimerisation domain 373 426 IPR012967 GO:0046983
Seca7g07485 699 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 362 699 IPR016461 GO:0008168
Seca7g07485 699 CDD AdoMet_MTases 184 277 - -
Seca7g07485 699 Gene3D Vaccinia Virus protein VP39 509 687 IPR029063 -
Seca7g07485 699 FunFam Caffeic acid 3-O-methyltransferase 342 456 - -
Seca7g07485 699 Gene3D - 8 172 IPR036388 -
Seca7g07485 699 FunFam Caffeic acid 3-O-methyltransferase 1 95 - -
Seca7g07485 699 SUPERFAMILY "Winged helix" DNA-binding domain 3 99 IPR036390 -
Seca7g07485 699 Gene3D Vaccinia Virus protein VP39 154 332 IPR029063 -
Seca7g07485 699 CDD AdoMet_MTases 539 632 - -
Seca7g07485 699 Gene3D - 369 527 IPR036388 -
Seca7g07485 699 FunFam Caffeic acid O-methyltransferase 98 344 - -
Seca7g07485 699 FunFam Caffeic acid O-methyltransferase 459 699 - -
Seca7g07485 699 SUPERFAMILY "Winged helix" DNA-binding domain 355 460 IPR036390 -
Seca7g07485 699 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 480 697 IPR029063 -
Seca7g07485 699 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 344 IPR016461 GO:0008168
Seca7g07485 699 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 101 341 IPR029063 -
Seca7g07485 699 Pfam O-methyltransferase domain 478 680 IPR001077 GO:0008171
Seca7g07485 699 Pfam O-methyltransferase domain 120 325 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07485 Seca-Chr7 178368198 178380086 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07485 347 689 Monolignol Biosynthesis Gene Families AT5G54160 45.143 6.38e-97 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07485 - - atri:130806785 548.895