Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07483 ATGCTACTCAGCACCAATCTTGTATATTCATCAGTCCTCAATGCCGCTATTGACCTCAATTTATTTGACATCATAGCCAAGGCAACCCCACCTGGTTCTTTCATCTCATCCTCTCAAATTGCCTCTAAGATGCCATTGCAAAACCAACACAAAGACTTGTCCAATAGGCTTGACCGCATGCTCCGTATGCTTGCCAGTTACAACATTCTCACTTTTGCCACTCGCACCACTCAGAATGGCACCACCGAGAGAGTTTATGGCCTCTCACAAGTTGGAAAATTCTTAGTCCCTGATGAAAGTAAAGGCAACGTGGCATCTTACATATCATTTCTCTGTTATCCAGCACTTTTACAGGTTTGGTTGAACTTCAAGGAAGCGGTGATTGATCCAGACATTGACCTGTTCAAGCAGCTTCATGGAGTAACTGTGTATGAGTACATGCAAAAGGATCCTAAACTTAGCAACATTTTTAACAAGGCTATGGCAGATATGTCTGCAACATTGATGGAAAGAATACTTGAAATATATAATGGATTTGAGGGAATATCAACATTAGTTGATGTAGGAGGTGGGAATGGTGAAATTCTCAAAACCATTATCTCCAGGTATCCTTCAATAAAGGGAATTAATTTTGATCTGCCCCAAGTCATTCAACATGCACCATCTCTTCCAGGGATTGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTCCACGGGGTGACGCCATAATACTAAAGAATGTATGCCATAATTGGTCAGATGAAAAATGCATAGAATTTTTAAGCAATTGTCACAAGGCTTTGTCACCAAATGGGAAAGTTATTGTCATGGAGTTCATATCGCCTGAAGAACCAGAGCCAACGGAAGCATCCCAGCTTGTTTCCACTATTGACAACCTCATGTTTATCACAGTTGGTGGAAGGGAAAGAACTCAGAAACAATATGAGAATTTGTGCAAGTTATCTGGATTTTCAAAACTTCATGTCCCTTGTTGCGCCTTTTCTGTATCAGTACAAGTAACTATGGGTGATTCCTGCAGTTTCAACAAGGATATAACTTGCTCTGAAAAAACAGAGGATGGTGCTCACCTATCTGCAATGCTACTCAGTACTAATCTGGTGTACTCATCAGTCCTCAATGCTGCTATTGACCTCAATTTATTTGACATCATAGCTAAGGCAACCCCACCTGGTTCTTTCATCTCATCCTCCCAAATTGCCTCTAAGATGCCATTACAAAACCAACACAAAGACTTGCCCAATAGGCTTGACCGCATGCTCCGTATGCTTGCCAGTTACAACATTCTCACTTTTGCCACTCGGCCCACTCAGAATGGCACCACCGAGAGAGTTTATGGCCTCTCACAAGTTGGAAAACACTTTGTCCCTGATGACACTAAGGGCAACAATGCTTCATTCGTATCATATCTCTCTTATCCAGCACTGTTACAAGTTTGGTTGAACTTCAAGGAAGCTGTGATTAATGAAGACATTGACCTGTTCAAGAAACTTCATGGAGTAACTGTGTATGAGTACATGGACAAGGATCCTAAACTTAGCTACATTTTTAACAAGGCTATGGCCGATATGTCTACAAAAGTGATGGAAAAAGTACTTGACACATATACTGGATTTGAGGGAATATCAACATTGGTTGATGTAGGAGGTGGGAATGGTCAATTTCTCAAAACCATAATCTCCAGGTACCCTTTAATAAAGGGAATTAATTTTGATCTGCCCCATGCCATTCAAAAAGCACCATCTCTTCCAGGGATTGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTCCACAGGGTGACGCCATGTTACTAAAGAGTATATGCCATAATTGGTCAGATGAAAAATGCATAGAATTTTTAAGCAATTGTCACAAAGCATTGCCGCCAAATGGGAAGGTTATTATTATGGAGTTCATAACACCTGAAGAACCAGAGCCAACAGAAGCATCCCAACTTCTTTCCACTATTGACAACCTCATGTTTATCACAGTTGGTGGAAGGGAAAGAACTCAGAAACAATATGAGAATTTGTGCAAGTTATCTGGATTTTCAAAATTTCATGTTGCTTGTTTGGCCTTTTCTACTTTCGGAGTGATGGAATTTTATAAATGA 2133 0.406 MLLSTNLVYSSVLNAAIDLNLFDIIAKATPPGSFISSSQIASKMPLQNQHKDLSNRLDRMLRMLASYNILTFATRTTQNGTTERVYGLSQVGKFLVPDESKGNVASYISFLCYPALLQVWLNFKEAVIDPDIDLFKQLHGVTVYEYMQKDPKLSNIFNKAMADMSATLMERILEIYNGFEGISTLVDVGGGNGEILKTIISRYPSIKGINFDLPQVIQHAPSLPGIEHVGGDMFASVPRGDAIILKNVCHNWSDEKCIEFLSNCHKALSPNGKVIVMEFISPEEPEPTEASQLVSTIDNLMFITVGGRERTQKQYENLCKLSGFSKLHVPCCAFSVSVQVTMGDSCSFNKDITCSEKTEDGAHLSAMLLSTNLVYSSVLNAAIDLNLFDIIAKATPPGSFISSSQIASKMPLQNQHKDLPNRLDRMLRMLASYNILTFATRPTQNGTTERVYGLSQVGKHFVPDDTKGNNASFVSYLSYPALLQVWLNFKEAVINEDIDLFKKLHGVTVYEYMDKDPKLSYIFNKAMADMSTKVMEKVLDTYTGFEGISTLVDVGGGNGQFLKTIISRYPLIKGINFDLPHAIQKAPSLPGIEHVGGDMFASVPQGDAMLLKSICHNWSDEKCIEFLSNCHKALPPNGKVIIMEFITPEEPEPTEASQLLSTIDNLMFITVGGRERTQKQYENLCKLSGFSKFHVACLAFSTFGVMEFYK. 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07483 710 FunFam Caffeic acid 3-O-methyltransferase 346 461 - -
Seca7g07483 710 FunFam Caffeic acid O-methyltransferase 98 342 - -
Seca7g07483 710 FunFam Caffeic acid 3-O-methyltransferase 1 95 - -
Seca7g07483 710 Gene3D - 343 461 IPR036388 -
Seca7g07483 710 Pfam Dimerisation domain 12 65 IPR012967 GO:0046983
Seca7g07483 710 Pfam Dimerisation domain 378 431 IPR012967 GO:0046983
Seca7g07483 710 SUPERFAMILY "Winged helix" DNA-binding domain 360 465 IPR036390 -
Seca7g07483 710 SUPERFAMILY "Winged helix" DNA-binding domain 3 99 IPR036390 -
Seca7g07483 710 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 344 IPR016461 GO:0008168
Seca7g07483 710 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 103 336 IPR029063 -
Seca7g07483 710 CDD AdoMet_MTases 550 643 - -
Seca7g07483 710 CDD AdoMet_MTases 184 277 - -
Seca7g07483 710 FunFam Caffeic acid O-methyltransferase 464 710 - -
Seca7g07483 710 Pfam O-methyltransferase domain 486 691 IPR001077 GO:0008171
Seca7g07483 710 Pfam O-methyltransferase domain 120 325 IPR001077 GO:0008171
Seca7g07483 710 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 367 710 IPR016461 GO:0008168
Seca7g07483 710 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 473 708 IPR029063 -
Seca7g07483 710 Gene3D Vaccinia Virus protein VP39 154 333 IPR029063 -
Seca7g07483 710 Gene3D - 8 172 IPR036388 -
Seca7g07483 710 PANTHER O-METHYLTRANSFERASE 366 700 IPR016461 GO:0008168
Seca7g07483 710 Gene3D Vaccinia Virus protein VP39 463 710 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07483 Seca-Chr7 178344068 178354518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07483 352 700 Monolignol Biosynthesis Gene Families AT5G54160 44.857 3.41e-101 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07483 - - atri:130806785 568.155