Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07478 ATGGATCCAAAAGGAGGCTTGTGTGCTAACAACTGGGCAAGGTCCTCTTCCTTAACCTCATTAGGGAATGGATTACAGACAAATTTGTCTTCAGATCCACCCCCTTTCTATGGGGTCAGGATGGAAGCACCTTTCAAACAATTCAACCAATCATCTTCAACTCAGTCTGTTCTTCCAGGTGAATCTAACAAAGATATGAAGATCCCTAATCAAGAAAATTGTCCACTGGGTGACTCATCACAAACCAGTAAACTCCAAGATTGGGATCCCAGTGTGATGTTGAATAACCTCTCCTTCCTGGAAGATAAGATTCATCAGCTCCAGGGTCTAGTGCACTTGATTATTAATAAAAAGTGCCAACCTTTTGGACAACCTCAAGAACTCGTGACTCAGGAACAGCAGCTCATTACAGCTGATCTTACATCAATTATTGTTCAATTGATCTCTACCGCAGGTAGTCTTCTCCCTTCTGTTAGGCACACTCTTACAAACACAAGTCCATTGGTTGGACAGCTTGGCCAGCTTCGTGGGATTAACCTTCCTTTCGGGTCAGGCTCAACTACTGGTATTCAGCCACAAAATAATAATGGAAATAAATTGTATGATCAGCCTATGCAGAGTGATCCACCTAATAATTGTGAAATGGAGCAAAACTACAATATGGAAGAGCAGGAGCATAAAGATGAAGAAGATGTGGAGGAGGGAGAGAACCTTCCACCTGGTTCATACGAGATTTTACAATTAGAAAAAGAAGAAATCCTTGCACCTCATACACATTTCTGTACAATTTGTGGGAAGGGGTTCAAGAGGGATGCAAATCTCCGAATGCACATGCGAGGCCACGGTGACGAGTACAAAACACCAGCAGCTCTTGCAAAACCACATAAAGAAACTGGCTCTGAACCAAAGCTTATCAAGAGGTATTCCTGCCCCTATGCTGGCTGCAAGCGAAACAAGGATCACAAGAAATTTCAGCCTCTAAAGACCATTTTGTGTGTCAAAAATCACTACAAAAGAACACACTGTGACAAGAGCTACACTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTCATTGCAGATCTCAAAACTCATGAAAAACACTGTGGCAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCCCTTTTCCAAGGCCATACACCAGCGATTCCTTTGGATGACAACAAAGGACTGACCGAGCCACATGATCACTGTGACACCAAAGAAAACAACAGTAAGGTTGGAAGTATGAGCTTCTGTTTTGGATCAAATCCTTCAAGTGAAATTGCAGTTCAAAACATCATGGATGTGAAAGGCAACATTGATGATCCTATCAGTTATTTCTCATCTTTGAACTTTGATGGCTGTAACTTTGGTGGGTTCAATGAATTCTCCCAACCTCCATTTGAAGACTCAGAAGGTTCTTTCTCCTTTCTCATGTCCGGATCGTTTAATTATCCTCCTAAATCTGGTGGTGAATCATGTTCTGATAATCTGTAG 1536 0.4186 MDPKGGLCANNWARSSSLTSLGNGLQTNLSSDPPPFYGVRMEAPFKQFNQSSSTQSVLPGESNKDMKIPNQENCPLGDSSQTSKLQDWDPSVMLNNLSFLEDKIHQLQGLVHLIINKKCQPFGQPQELVTQEQQLITADLTSIIVQLISTAGSLLPSVRHTLTNTSPLVGQLGQLRGINLPFGSGSTTGIQPQNNNGNKLYDQPMQSDPPNNCEMEQNYNMEEQEHKDEEDVEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDNKGLTEPHDHCDTKENNSKVGSMSFCFGSNPSSEIAVQNIMDVKGNIDDPISYFSSLNFDGCNFGGFNEFSQPPFEDSEGSFSFLMSGSFNYPPKSGGESCSDNL. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07478 511 Gene3D Classic Zinc Finger 243 313 - -
Seca7g07478 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 286 IPR013087 -
Seca7g07478 511 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 67 483 IPR044300 GO:0010044|GO:0010447
Seca7g07478 511 SUPERFAMILY beta-beta-alpha zinc fingers 257 284 IPR036236 -
Seca7g07478 511 ProSitePatterns Zinc finger C2H2 type domain signature. 261 281 IPR013087 -
Seca7g07478 511 SMART c2h2final6 259 281 IPR013087 -
Seca7g07478 511 SMART c2h2final6 308 341 IPR013087 -
Seca7g07478 511 SMART c2h2final6 346 368 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07478 Seca-Chr7 178290726 178293344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07478 227 509 C2H2 Transcription Factor Family AT1G34370 70.486 1.81e-140 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g07478 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07478 - - gmx:100170687 870.152