Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07473 ATGTCTGGCAACTCAAATTGCTCTGTTTACATAGGCAATCTGGATGAGAGGGTGACAGACAGGGTCTTGTATGATATATTAATACAAGCAGGAAGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAATCTGAGAAACCAAAAGGTTTTGCTTTTGCAGAATACGAAACTGAGGAGATTGCAGACTATGCTGTCAGGCTTTTCTCAGGCCTTGTAACACTGTACAACAGAACACTTAAGTTTGCGATATCTGCGAGAGACAAAAGTACCCCTAATGGCTCTACTGCAATTACACCGACATCAAATTCTTCTCAAAGACCAAGGCCTTACCCTGTGGCAATAAATAATTCTGAAAATTTTCAGCACTCCACTAGGCTATCAACACCTGACCGATTTTCAGACTATTCAGCAAATTATTCACAAGTTCCTCCTCACCGTGTAACCGATCAATCTAGTGGGTATGGATCTCACTATAGTGGCAACAATTATGAATACAGTCGGAGAGCTTTTGGGGCAACATTGGATAGCATTAGCCGTAATAGGTCACGCCGCTCTGATAAAAGTAGCCCAATCTCTTACCCATCATACTAA 591 0.4162 MSGNSNCSVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADYAVRLFSGLVTLYNRTLKFAISARDKSTPNGSTAITPTSNSSQRPRPYPVAINNSENFQHSTRLSTPDRFSDYSANYSQVPPHRVTDQSSGYGSHYSGNNYEYSRRAFGATLDSISRNRSRRSDKSSPISYPSY. 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07473 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Seca7g07473 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
Seca7g07473 196 SMART rrm1_1 8 82 IPR000504 GO:0003723
Seca7g07473 196 MobiDBLite consensus disorder prediction 87 160 - -
Seca7g07473 196 SUPERFAMILY RNA-binding domain, RBD 4 90 IPR035979 GO:0003676
Seca7g07473 196 Gene3D - 2 96 IPR012677 -
Seca7g07473 196 MobiDBLite consensus disorder prediction 174 196 - -
Seca7g07473 196 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07473 Seca-Chr7 178232030 178237681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07473 8 89 Eukaryotic Initiation Factors Gene Family AT1G49760 31.707 1.46e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07473 K12831 - gmx:100803118 343.584