Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07433 ATGGCCAAGGACGTTGAGGTTGCTGGCTCCTTCTCTAACAAGGACTACCATGACCCTCCTCCTGCACCTCTCATTGATGCTGAGGAGCTTACCAAGTGGTCCTTTTACAGGGCACTCATTGCTGAGTTCATTGCCACTTTGCTTTTCCTTTACATTACTGTTTTGACTGTGATTGGGTACAAGGCACAGAGTGATGTCAAAGCTGGTGGCGATGTTTGTGGAGGGGTTGGCATTCTTGGGATTGCATGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCTGGAATTTCTGGGGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTCTTGGCTCGCAAGGTGTCTTTGATCCGAGCTATCATGTACATGGTGGCTCAGTGCTTGGGGGCTATCTGTGGAGTTGGTTTGGTCAAGGCCTTCCAGAAGTCTCACTACAACAGGTATGGTGGTGGGGCTAATTCTCTCAATGATGGATACAGCACAGGTGTTGGATTGGGTGCTGAGATTATTGGCACCTTTGTTTTGGTATACACTGTGTTCTCTGCTACTGATCCTAAGAGGAATGCTAGAGATTCCCATGTGCCGGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCAGTCACTGGTACAGGCATTAACCCTGCTAGGAGTCTTGGAGCTGCTGTTATCTACAACCAAGACAAGCCCTGGGATGACCATTGGATCTTTTGGGTAGGACCATTTGCTGGGGCAGCTATTGCAGCCTTCTACCACCAGTTCATCTTAAGAGCAGGTGCAGCTAAGGCTCTTGGATCATTCAGGAGTAACCCCACTGTTTGA 858 0.4907 MAKDVEVAGSFSNKDYHDPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYITVLTVIGYKAQSDVKAGGDVCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQKSHYNRYGGGANSLNDGYSTGVGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNQDKPWDDHWIFWVGPFAGAAIAAFYHQFILRAGAAKALGSFRSNPTV. 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07433 285 CDD MIP 37 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g07433 285 Pfam Major intrinsic protein 29 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g07433 285 Gene3D Glycerol uptake facilitator protein. 22 285 IPR023271 -
Seca7g07433 285 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g07433 285 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g07433 285 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g07433 285 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g07433 285 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g07433 285 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g07433 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 279 IPR034294 -
Seca7g07433 285 NCBIfam MIP family channel protein 41 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g07433 285 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Seca7g07433 285 SUPERFAMILY Aquaporin-like 29 269 IPR023271 -
Seca7g07433 285 FunFam Probable aquaporin PIP1-2 22 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07433 Seca-Chr7 177684424 177687567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07433 1 285 Major Intrinsic Protein MIP AT2G37170 85.263 0.0 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07433 K09872 - gmx:547857 539.65