Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07425 ATGTTTATGGTTATGGATTCCATGGATAGGAGCCCAGAAAGGTGTTTAGATTCTCAACTGTGGCATGCTTGTGCTGGTGCCATGGTTCAAATGCCACCTCTCAACACAAAAGTCTTCTACTTTCCTCAGGGTCACGCAGAGCACGCCCATGGGAAAGTAGATTTTGGCCAAACCAGGGTTCCACCTCTCATCCCTTGCAGGGTCTCTGCTATGAAATACATGGCAGACCCTGACACAGATGAGGTGTATGTGAAAATGAGGCTGATCCCTTTGAGAGAACATGAATTGGATTTGGAAGATGATTGTTTCTTGGGGAACAATGGATTGGAGGGTCAAGAAAAACCCACCTCTTTTGCCAAGACATTGACACAATCAGATGCTAACAATGGTGGAGGATTCTCTGTGCCTCGTTACTGTGCAGAGACCATCTTCCCAAGGTTGGATTATTCTGCAGAACCTCCAGTTCAGACCATCATTGCCAAGGATATGCATGGACAGTGCTGGAAGTTTAGGCATATCTATAGAGGGACACCTAGGAGGCATCTTTTGACCACTGGATGGAGCAATTTTGTGAACCAGAAGAAGCTTGTTGCTGGGGATTCTATTGTGTTTCTGAGGGCAGAAAATGGTGATCTTTGTGTTGGGATAAGGAGGGCTAAGAAGGGAATTGGTGGTGGGCCTGAGTTTTCTTCTTCTTCTTCTTGTTCTTGGAACCAGGTATCAGCCCCTATGTTTGGTGGGGGTTCTGGTTTCTTGTGTGGTAGTGAGAACAATTTGGTGAGTAGAAAATGTGGTGATGAGTTTATTGGAAGAGTGACAGGTGAATCTGTTGTTGAGGCTGTTACTTGTGCTGTTAATGGCAGACCCTTTGAGGTTGTGTACTACCCAAGGGCTAGCACCCCAGAGTTTTGTGTTAAGGCCTCTGCTGTGAAGGCTTCAATGCAAATACAGTGGAGTTCAGGGATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGAACCATTTCTTCTGTTCAAGTTGCAGATCCTATTCGTTGGCCTGATTCTCCTTGGCGTCTTCTGCAGGTGGTGTGGGATGAACCAGATTTACTTCAAAATGTCAAGTGTGTAAACCCTTGGTTGGTTGAACTAGTCTCCAACATGCCAACCTTCAATCTCTCTCCATTCTCACCTCCAAGAAAGAAGCAAAGGTTTATACAAGACCCATATTTTCACCTCATAAACCAACTTCCAATGCCGCCACTCTCCAGCAATTTTCTCAGTTATACTAACTCTCTGTGTAACATCAAAGAGAATAGTTCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGACTAACTCCATCTGATTTTCCCTTCAACAAGCTGCAACCAGACATGCTTCTAGGTGGTTTTTCAAGGCTTGACCACCATGTAACTCAACCTGTTAGGCCTCCTTGTGGAACAACCTCCTATAATAAGAGCAGCACTAAGACCAATGTTGACTTATCTTGCTTGTTGACTGTGGGAAATCCTGGCCAGAATTTTAAGGAATCCAATGAAGCAAAAACACCCCACATTTTGTTATTTGGAAAACTCATTCATACTGAGCAGAAGAGTTCAAACAGTTGCTCTGCTAGTACCACAGGGAATAATAGTGTGTCTGAAGGTACTTCCTTGAAGACATCAAATGATTCTTCTCATGACTTGGGTTTTGCTTTGCATCAAAATAGTCCAATTGAGAACTCTTCTGATGGAGGCTCTCCCTGGTACAAGGATCAACACAAGTCTGATCTTGGAGCTGAAAATGTTAGCACATTATGTATGGCTTTATAA 1842 0.4408 MFMVMDSMDRSPERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFGQTRVPPLIPCRVSAMKYMADPDTDEVYVKMRLIPLREHELDLEDDCFLGNNGLEGQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGPEFSSSSSCSWNQVSAPMFGGGSGFLCGSENNLVSRKCGDEFIGRVTGESVVEAVTCAVNGRPFEVVYYPRASTPEFCVKASAVKASMQIQWSSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPTFNLSPFSPPRKKQRFIQDPYFHLINQLPMPPLSSNFLSYTNSLCNIKENSSAGIQGARHAQIGLTPSDFPFNKLQPDMLLGGFSRLDHHVTQPVRPPCGTTSYNKSSTKTNVDLSCLLTVGNPGQNFKESNEAKTPHILLFGKLIHTEQKSSNSCSASTTGNNSVSEGTSLKTSNDSSHDLGFALHQNSPIENSSDGGSPWYKDQHKSDLGAENVSTLCMAL. 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07425 613 Gene3D - 317 391 - -
Seca7g07425 613 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Seca7g07425 613 CDD B3_DNA 117 218 IPR003340 GO:0003677
Seca7g07425 613 MobiDBLite consensus disorder prediction 543 598 - -
Seca7g07425 613 FunFam Auxin response factor 318 391 - -
Seca7g07425 613 Gene3D - 116 220 IPR015300 -
Seca7g07425 613 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Seca7g07425 613 SUPERFAMILY DNA-binding pseudobarrel domain 112 219 IPR015300 -
Seca7g07425 613 Pfam Auxin response factor 280 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca7g07425 613 MobiDBLite consensus disorder prediction 543 592 - -
Seca7g07425 613 SMART B3_2 118 220 IPR003340 GO:0003677
Seca7g07425 613 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 569 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca7g07425 613 FunFam Auxin response factor 116 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07425 Seca-Chr7 177569562 177572625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07425 1 599 B3 DNA Binding Superfamily AT4G30080 56.086 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca7g07425 B3 2.7e-21 CL0405