Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07422 ATGCGCCATATGTTCCCATTCAACAAATGCTGCTATAACTTGTCTTTCTCATTGTTTTTATATCCTAATTTTCTTTCTGTTTTGAATTTTCTCAGGAAAATTTCACTTGCCGAGAAAATGGTTGGACCAAACTTCATGGATGAGATAGACTGCGGCAGCTTCTTTGACCACATCGACGACCTTCTCGATTTCCCAGTCGAGGACGTCGACGGCGGCGGCGCCTCCTTGCCGTCAGTTGCTGCAACCGGAAACTGCAACTCGCTGGCGAGCATCTGGCCCCCTGAGTCCGAGTCATTTCCCGGCTCCGACTCGGTGTTTTCCGGCAACAGCGCTTCGGACCTCTCCGCCGAGCTTTCAGTTCCGTATGAAGACATTGTCCAATTGGAATGGCTGTCCAATTTTGTGGAGGATTCCTTCAGTGGGGGGAGTCTTACAATGAAGAAAGTGGAGGAGCAGCCATCATGTGCCACCAAGGAGGAATCAGTGCATACCCAATTTCAGACATCAAGCCCTGTTTCTGTTCTTGAAAGCAGCAGCTCCTGCTCTGGTGGCAAAACTGCTTCTGAGATTTACATTCCTGTGCCTTGTGGACGTGCACGCAGCAAGCGTCCACGCCCTGCAACCTTCAACCCTCGTCCTGCAATGCACCTCATTTCCCCTGCTTCCTCTTTTGTTGGGGAGAACATTCAGCCTAATGTCATCTCCACCAAGGCATCTTCAGATTCTGAGAATTTTGCTGAGTCTCAACCAGTGACCAAGTTACCAAGGAAAGACTCTGGAGAGCCTAAAAAGAAAAAGAAAATCAAAGTGCCACTTCCTTTAGGTCCATCTGATAGCAACAATCAGAATGGTTCACAACCTGTTAGGAAATGCATGCATTGTGAGATCACCAAGACACCACAATGGAGGGCAGGGCCAATGGGGCCAAAAACTCTCTGCAATGCATGTGGTGTTCGCTATAAGTCAGGCAGGCTCTTCCCTGAATATAGGCCTGCTGCCAGTCCAACTTTTTGTCCATCTTTGCACTCCAATTCACATAAGAAGGTTCTGGAAATGAGATGCAAGGGTGTGGAGAATTCTGGTTTTGAACCACATTCAGCTGCCTCACCTGAACTCATTCCCAATACTAACAGCAGCATTACCCTGGAATACATGTGA 1158 0.4819 MRHMFPFNKCCYNLSFSLFLYPNFLSVLNFLRKISLAEKMVGPNFMDEIDCGSFFDHIDDLLDFPVEDVDGGGASLPSVAATGNCNSLASIWPPESESFPGSDSVFSGNSASDLSAELSVPYEDIVQLEWLSNFVEDSFSGGSLTMKKVEEQPSCATKEESVHTQFQTSSPVSVLESSSSCSGGKTASEIYIPVPCGRARSKRPRPATFNPRPAMHLISPASSFVGENIQPNVISTKASSDSENFAESQPVTKLPRKDSGEPKKKKKIKVPLPLGPSDSNNQNGSQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSLHSNSHKKVLEMRCKGVENSGFEPHSAASPELIPNTNSSITLEYM. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07422 385 PANTHER GATA TRANSCRIPTION FACTOR 54 358 - -
Seca7g07422 385 ProSiteProfiles GATA-type zinc finger domain profile. 285 321 IPR000679 GO:0006355|GO:0043565
Seca7g07422 385 MobiDBLite consensus disorder prediction 254 268 - -
Seca7g07422 385 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 289 348 - -
Seca7g07422 385 SMART GATA_3 285 335 IPR000679 GO:0006355|GO:0043565
Seca7g07422 385 MobiDBLite consensus disorder prediction 235 287 - -
Seca7g07422 385 FunFam GATA transcription factor 280 369 - -
Seca7g07422 385 ProSitePatterns GATA-type zinc finger domain. 291 316 IPR000679 GO:0006355|GO:0043565
Seca7g07422 385 CDD ZnF_GATA 290 337 IPR000679 GO:0006355|GO:0043565
Seca7g07422 385 MobiDBLite consensus disorder prediction 235 249 - -
Seca7g07422 385 PIRSF Txn_fac_GATA_plant 33 379 IPR016679 GO:0003677|GO:0005634|GO:0045893
Seca7g07422 385 Gene3D - 285 335 IPR013088 GO:0006355|GO:0008270
Seca7g07422 385 Pfam GATA zinc finger 291 324 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07422 Seca-Chr7 177530979 177535214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07422 52 359 C2C2-Gata Transcription Factor Family AT1G08010 36.013 1.26e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca7g07422 GATA 6.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07422 - - gmx:100816641 588.186