Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07411 ATGGGTAATGTTGAAATCCCCAATTGGCTTGAAGGGTTGCCACTGGCACCGGAATTTCACCCTACTGATACTGAATTTGCCGACCCGATTGCTTATATTTCAAAGATTGAAAAGGAAGCAGGGAACTTTGGGATATGTAAAATTATCCCACCATTACCCAAACCTTCAAAAAAATATGTCTTTCATAATTTGAATAGGTCCCTCACGAAGTGCCCTGAATTAGGTCCAGATAACAGTCCCTTGGCTGGTTCTAATTCTTCAAAAATGGGGGCCGGGGATAGTGGTAGTGATGGGGTTTTGCGAGCTGTGTTTACCACAAGGCATCAAGAACTGGGACAGAGTGTGAAAAAAACCAAAGGGACAGTTCAGAATCCACTGTCAGGTGTACATAAGCAAGTATGGCAGAGTGGGGAGGTCTATACACTGGAACAGTTTGAGTCCAAATCGAAGTCTTTTGCGAGAAGCGTGCTAGGTATGGTGAAGGATGTTTCTCCACTTGTTATAGAGGCTATGTTTTGGAAGGCAGCTTTAGAGAAGCCTATATATTTGGAGTATGCCAATGATGTGCCTGGGTCAGCTTTTGGAGAATCCCAGGGTCAATTTTATTGTAGTCATAGAAGGCGAAGAAAAAGGACTTATTATAAGAGTAGACTAGATAGCTCTGATTGTAAACAAAATGAAATGGGTAGTATAAGAGATACCCAAATTGATGAGACTAAGGGTGCTTCTGCCCAAAGTCCTGCAGACACGTGTTTACAGATGTCCAAGTCAGCTACAACTGTCTCAACATCTTCATCAAATGAAGCTTCACAGTCTTCCAAGGAAAAGAATTCAGATGCCAACAGTGATATGCAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAATTTGCAAGTTATTGCACGCTCATCTGGGTCACTAACACGTTTCATGCCGGATGATATTCCTGGTGTTACTTCACCCATGGTATACATCGGTATGCTGTTCAGTTGGTTTGCTTGGCATGTAGAGGATCATGAACTTCACAGCTTGAATTTTCTTCACACTGGCTCATCAAAGACTTGGTATGCTGTTCCTGGAGATTATGCCCTTGCTTTTGAGGAAGTCATCCGCTCTAAGGGTTATGGTGGTAATATTGATCACTTAGCTGCTTTGAAACTTTTGGGTGAGAAAACGACACTTTTGACACCTGAAGTAGTTGTTGCATCTGGGATTCCTTGTTACAGGTTAATACAGAACCCTGGTGAATTTGTTGTGACTTTTCCGAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCAGCTAACTTTGGGACACCACAATGGCTTAGAGTAGCTAAGGAAGCTGCAGTGCGTAGAGCTGCAATGAATTATCTTCCAATGCTTTCCCATCAGCAACTGCTTTACCTGCTGACCATGTCTTTTCTTTCAAGAGTACCAAGAACACTATTACCTGGTGTGCGCAGTTCTCGTCTGAGAGACCGTCAGAAAGAAGAAAGAGAAGTTTTAGTAAAACAGGCCTTTATAGAAGATATGCTGCAAGAAAATAAACTGCTATCCATTCTTCTTGGAAAGGAAGCAACTAAACAAGCTGTTTTATGGAATGCTGATTTACTACCTGATTCCAGCAAAGATAATCAGCTTCCTGATTTAGCTTCTACTACTGGAACCTATATGGCCGACATGTCCAATATTAGTTCAGCAGATAAGGGTAGTAATTATCTGCTTGATGAGATGAGTTTGTATATGGAGAATCTGAATGATGTATATTTTGGTTGTGATGATCTTCCATATCATTTCCAAACTGATTCAGGAGCACTGGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCATTTATGGCTGTGATACAACCAACTGAGAAATTGATAATGGAACTTTTTCCTGATAATCGTCATCTAGTTCAAGATTCCTCTCTAAACTCTACTGCCGCCCTTCATAGCTCAGTCTCAAGTAGGGATCTTTCTGTTTCTGAGCTTTCTTCAGCAAATGATTCACCAGATCAATCATTAATCAAGTGCAATAAATGTTGGAACACCTCCAGTAAATTTTTTAGGCCACGGATTTTCTGCCTGGAGCATGCTGTTCAGATAGTGGATATGTTGCATTGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGACTATCAGAAAATAAAGGCACATGCCAGGGGAGTTGCAGAAGAAATACATAGTGCTTTTGATTATAATGATGTTCCGTTAGATATTGCATCCCCAGAAAATTTGGCTCTGATAGATCTTGCAATTGATGGTGAAGAACATGGTGATTGTGAAGACTGGACATCTAAACTAGGCATTAACCTACGATATTGTGTCAATGCTAGAAATAACTCTCCATCTAAACAAGTTCCTTGGACACTAGCATTAGGGATGCTGTTCTATGATAAATCTCCTGGTTCAGAACTTTTATCTTTAAATTGGCAGTCACGGAAAAGTCGGTCCAAAAGGTCAAAAGGTTTGGCTCAAACTAAACCTTCTGACTTGAGAAAGAAGGATGATCAATTAGAGAGAAGAATAGATTGCTCCAATGCTGGAAAGAAGCTTATTCAATATTCAAGAAGGAAGTTCAAGTCAAAGCAAAGTTGTTCCTCTGTAGCAAGCATGGTCCATGAATTCCAAGAGAAGTCCAAAAATGCATCAGCTGTCTTGAGTGGGGATCATTATAATTATGTTTCTAAAGATAAGCTTGACACAGAGAATTTCAGGAGTGATTGTGGATTGTCATGTGTCTCTGCTTCCACTGCAATGTCCCCAATGCACACTGAAATCCAGATTGCTGAAGTGTCTACTAGTATGGGATTGAATACTGCTACGTCACAACTTTCAAATTCCTGTCCTAATCATATTTTAATGAATGAAAAAGTTGGGGCAGAGATTGAGAATAAAACCTTGCCGGAAATAAATATAGATGGAAAAAGTGACTCAACATTTGGTCATTCTAAGATGCATCACAATACCAGTGACTCAGAAATATGTGGCAAGGAGAGCCAGGATTGTCAGGAGAAGAAATATTCTAGCTTACTTACAAATGCAACTGACAGAAATATTGATATGTTCAGAAAGGATCAAATTACAGAAGCAATTGTCATGGATAGCAAGTGTAATAGCTTAGATTTGGTTGATGAAGGACATAAGGAATATCAGTCTACATGCAAAAGCAACAAGGAACCTGTGTTATCTACTGCTTCATTGGTAAACCAGCCTACTCTTGCCTCTATGGATGGAAGTTTTGAAAGTCCAAATAATAATTATGCTGCAGAAAGAGTTAGCAATGCTATGTTTTTAAAAGAGACAATTGAGGAAGAAATCAATTCTTTGAGTGAAAGGGGCAAGAAACCTCTAAGTGATGGTAAACCAATAAGTGAACATACTCCAAATGGAGAAGTTTGTGAAGTTCCAAGAGAGCTTTATGCTGCTGCAGACTTCCATAATAGAGTAATCTTGGATGCTGAGGTGCAGCAAGAAACTCAGGTTGGGAAAAGTAACGAAAAAGAAATAAATGAATCCACTCATGTCTCAGGAGAACGATCATGTGAATTTACAAAAGGGGAATATGGTGAAGGGTTGAATGATGAAGTAGTTTCAAAGTCTGCAAAGCAGTGTCAGATCCAAATTAAGAATAGAATTAATGAGGAATACGCTTCTAGTTATGTTGCAAAAGGTGATAATAGAAGTGTAACTATATCAGAATTAGGATGTTCTGAAGGTTCAGTGGAAACCTGTCCTAAAGAAGACTCCTGTATTCAATTAATTTCTGATAGAGAAAAGGAAATGGAAATCCAGCCAATTAATAGAATTGATGAGGAACTTTGCTCTGATACTGAGACATTCTTAAAGGATTCTTCTGTGTCGATACAGGAACGCTCTCAAATTGAGAAAAAGACGTGTGGTAGAGAAAACAAAAATGAAAGTGAAGTTCATTTGTTACAAGATAATAGGGAGCTGGAAAGCTGTGAGTTGACTAAAGCAGTTCCCAGGCCAAATGCTGGGAAGAGAAAAAAGAGGAAAGTGGAAGAGACAACAGACAACCAATTCGAATGCAACAGCTTTATTCGAGGTCCATGTGAGGGACTGAGGCCAAGAGCTGGGAAGATTGCCACAGGCAAAAATGGGGAGGACATCAGCCAAAATGACATGGAAAATTCGGTTGCCAAACGGGCACGGAAACCTTCTGAAGCTCCGGTTCCTCGCAAGAATAAAAAAGATGATGTTAAAAAGCCCCACAGGTGTGACCTTGATGGTTGCCGTATGAGTTTCACGACTAAGACTGAGTTATCAATGCACAAACGTAACCTTTGCCCACATAAAGGGTGTGGTAAGAAGTTCAGTTCCCACAAATATGCTATGCTTCACGAACGCGTTCATGATGATAAGAGGCCCCTTAAATGCCCATGGAAAGGTTGTTCCATGTCATTCAAGTGGGCATGGGCAAGGACAGAGCATATACGGGTGCATACCGGGGAGAAGCCTTATCAATGCAAGGTCGAGGGATGTGGCCTTTCTTTCAGGTTTGTATCAGATTTTAGCAGGCATAGACGGAAAACAGGGCACTATGTGAAATCTTCAGCTTGA 4635 0.405 MGNVEIPNWLEGLPLAPEFHPTDTEFADPIAYISKIEKEAGNFGICKIIPPLPKPSKKYVFHNLNRSLTKCPELGPDNSPLAGSNSSKMGAGDSGSDGVLRAVFTTRHQELGQSVKKTKGTVQNPLSGVHKQVWQSGEVYTLEQFESKSKSFARSVLGMVKDVSPLVIEAMFWKAALEKPIYLEYANDVPGSAFGESQGQFYCSHRRRRKRTYYKSRLDSSDCKQNEMGSIRDTQIDETKGASAQSPADTCLQMSKSATTVSTSSSNEASQSSKEKNSDANSDMQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSLNFLHTGSSKTWYAVPGDYALAFEEVIRSKGYGGNIDHLAALKLLGEKTTLLTPEVVVASGIPCYRLIQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLRVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFLSRVPRTLLPGVRSSRLRDRQKEEREVLVKQAFIEDMLQENKLLSILLGKEATKQAVLWNADLLPDSSKDNQLPDLASTTGTYMADMSNISSADKGSNYLLDEMSLYMENLNDVYFGCDDLPYHFQTDSGALACVGCGILGFPFMAVIQPTEKLIMELFPDNRHLVQDSSLNSTAALHSSVSSRDLSVSELSSANDSPDQSLIKCNKCWNTSSKFFRPRIFCLEHAVQIVDMLHCKGGANVLIICHSDYQKIKAHARGVAEEIHSAFDYNDVPLDIASPENLALIDLAIDGEEHGDCEDWTSKLGINLRYCVNARNNSPSKQVPWTLALGMLFYDKSPGSELLSLNWQSRKSRSKRSKGLAQTKPSDLRKKDDQLERRIDCSNAGKKLIQYSRRKFKSKQSCSSVASMVHEFQEKSKNASAVLSGDHYNYVSKDKLDTENFRSDCGLSCVSASTAMSPMHTEIQIAEVSTSMGLNTATSQLSNSCPNHILMNEKVGAEIENKTLPEINIDGKSDSTFGHSKMHHNTSDSEICGKESQDCQEKKYSSLLTNATDRNIDMFRKDQITEAIVMDSKCNSLDLVDEGHKEYQSTCKSNKEPVLSTASLVNQPTLASMDGSFESPNNNYAAERVSNAMFLKETIEEEINSLSERGKKPLSDGKPISEHTPNGEVCEVPRELYAAADFHNRVILDAEVQQETQVGKSNEKEINESTHVSGERSCEFTKGEYGEGLNDEVVSKSAKQCQIQIKNRINEEYASSYVAKGDNRSVTISELGCSEGSVETCPKEDSCIQLISDREKEMEIQPINRIDEELCSDTETFLKDSSVSIQERSQIEKKTCGRENKNESEVHLLQDNRELESCELTKAVPRPNAGKRKKRKVEETTDNQFECNSFIRGPCEGLRPRAGKIATGKNGEDISQNDMENSVAKRARKPSEAPVPRKNKKDDVKKPHRCDLDGCRMSFTTKTELSMHKRNLCPHKGCGKKFSSHKYAMLHERVHDDKRPLKCPWKGCSMSFKWAWARTEHIRVHTGEKPYQCKVEGCGLSFRFVSDFSRHRRKTGHYVKSSA. 1545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07411 1544 ProSitePatterns Zinc finger C2H2 type domain signature. 1454 1476 IPR013087 -
Seca7g07411 1544 Pfam JmjC domain, hydroxylase 324 443 IPR003347 -
Seca7g07411 1544 FunFam Probable lysine-specific demethylase ELF6 1479 1508 - -
Seca7g07411 1544 ProSiteProfiles Zinc finger C2H2 type domain profile. 1452 1481 IPR013087 -
Seca7g07411 1544 MobiDBLite consensus disorder prediction 1382 1427 - -
Seca7g07411 1544 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Seca7g07411 1544 MobiDBLite consensus disorder prediction 216 291 - -
Seca7g07411 1544 MobiDBLite consensus disorder prediction 1403 1427 - -
Seca7g07411 1544 SMART cupin_9 291 460 IPR003347 -
Seca7g07411 1544 Pfam jmjN domain 17 50 IPR003349 -
Seca7g07411 1544 ProSitePatterns Zinc finger C2H2 type domain signature. 1484 1506 IPR013087 -
Seca7g07411 1544 Gene3D Classic Zinc Finger 1450 1536 - -
Seca7g07411 1544 SUPERFAMILY beta-beta-alpha zinc fingers 1492 1535 IPR036236 -
Seca7g07411 1544 ProSiteProfiles Zinc finger C2H2 type domain profile. 1512 1543 IPR013087 -
Seca7g07411 1544 Gene3D Cupin 9 464 - -
Seca7g07411 1544 SMART c2h2final6 1512 1538 IPR013087 -
Seca7g07411 1544 SMART c2h2final6 1482 1506 IPR013087 -
Seca7g07411 1544 SMART c2h2final6 1452 1476 IPR013087 -
Seca7g07411 1544 SMART c2h2final6 1429 1451 IPR013087 -
Seca7g07411 1544 ProSiteProfiles JmjC domain profile. 291 460 IPR003347 -
Seca7g07411 1544 SUPERFAMILY Clavaminate synthase-like 291 457 - -
Seca7g07411 1544 MobiDBLite consensus disorder prediction 1177 1196 - -
Seca7g07411 1544 ProSitePatterns Zinc finger C2H2 type domain signature. 1514 1538 IPR013087 -
Seca7g07411 1544 SMART JmjN_1 15 55 IPR003349 -
Seca7g07411 1544 MobiDBLite consensus disorder prediction 72 93 - -
Seca7g07411 1544 ProSiteProfiles Zinc finger C2H2 type domain profile. 1482 1511 IPR013087 -
Seca7g07411 1544 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1478 - -
Seca7g07411 1544 MobiDBLite consensus disorder prediction 223 291 - -
Seca7g07411 1544 MobiDBLite consensus disorder prediction 1128 1148 - -
Seca7g07411 1544 MobiDBLite consensus disorder prediction 1182 1196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07411 Seca-Chr7 177351538 177364418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07411 1 876 C2H2 Transcription Factor Family AT5G04240 56.781 0.0 967
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g07411 JmjC 1.1e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07411 - - gmx:100819845 2320.81