LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca7g07405	ATGAACTCAAAGCATTTCTTAGTGCTTCTTTGGTTGCTCATTGTGGTTTTGAAGTGCCATTGCCAAGAGATTAATGACTATGACCAAATTGATAACCCTGCTGTTCTTCCCCTTATCACTCAGCTTGTTTATAGTCGAATTTCCAATTTGACTTCAGTCCTCAATCAAGAAATAACCAGAGACTCCAATTTCTGTGTCAAAGATCCGGATTCTGATTGGAATCAAGCATTTAATTTTTCATCTGATTTGAGCTTCTTGACTTCTTGCATTAAGAAGACTAAAGGAGATATTACCAAACGCTTGTGTACAGCAGCAGAAGTGAAGTTTTACTTAAATAATTTATTGGAGAAATCTACAAGTGCCAATTATTTAAAGCCTAACAAGAACTGCAATTTAACCTCGTGGGTCTCTGGTTGCGAGCCGGGATGGGCCTGTAGTGTTCACTCAAGCCAGAAGATTGACCTTAAAAATTCAAAAGAGATACCAGCAAGAACTTCAAACTGTCAAGCATGTTGTGAGGGCTTCTTTTGTCCTCATGGTATCACATGCATGATACCATGCCCTCTAGGTTCCTATTGCCCTCTTGCTACACTCAATAAAACAACTGGCATATGTGAACCATATCTTTATCAATTGCCTCCAATGCAGCCAAATCATACCTGTGGAGGAGCAAATATTTGGGCAGACATAAGTAGCAGTGGTGAAATGTTTTGCTCAGCAGGATCATATTGTCCAACAACGACGAAAAGAATTCCTTGTAGTAGTGGGCATTATTGCAGGATGGGTTCCACATCTGAGAAAAGATGCTTCAAGTTGAGTTCCTGTAATTCAAACACAGCAACCCAAAATATGCACGCATATGGAATTATGCTCATTGCTGCCTTGAGTACTTTGCTACTCATTATTTACAACTGTTCTGACCAAGTTCTCACTACTAGGGAAAGGAGAATCGCCAAATCTAGAGAAGCAGCAGCTAGAAGTGCAAAGAAGACTGCAAATGCACACCAAAGATGGAAATTTGCAAAAGATGCTGCTAAGAAGGGTGCAACTGGGCTGCAAGCTCAACTATCACGCAAACTCTCTCGTAAGAAGGAAACAGCACATCTGGGAAAAGTTAAAATTTTGAATCAAGAAACTTCAGAAACAGATGTTGAATTGTTGTCACATTCACAACCTGTCACTTCAAGCATGGTTGCAAGTTCATCTGTGGTGCCGAAGGAAAGTGGAAAAAAACCAAGTGGCCTAATGCATATAATGCATGAAATTGAAAATGATCCATATATTAATGACAACCCTACTATAGAAATAGAAACTAGAGATAAAAGTGTTACAGGAAATGTGTCAAAGGGAAAACAGCCACATACTCATACCCAAATTTTTAAGTACGCATATACTCAACTTGAAAAAGAGAAAGCTCAGCAACAAGAAAACAAGAACCTTACCTTCTCAGGAGTCATTAAAATGGCTACAAACACTGAAAAAAGAAAAAGGCCTTTTATTGAGATTTCTTTCAAAGATCTGACTCTTACATTGAAAGCTCAAAACAAACATATATTGAGAAATGTTACTGGGAAAATTAAACCTGGCCGCATTACTGCTGTCATGGGTCCATCAGGAGCTGGCAAGACAACATTGCTTTCAGCTCTAGCTGGAAAGGCATTTGGATGCTTGGTTACTGGTTCAATTCTTATAAATGAAAGGAATGAATCAATTCACTCCTTTAAGAAAATTATTGGCTTTGTGCCACAAGATGATGTAGTTCATGGAAACCTGACAGTGGAAGAGAATCTCTGGTTCAGTGCACAATGCCGGCTATCAGCTGACTTGTCAAAACCAGAAAAAGTTCTGGTTGTTGAAAGAGTTATTGAATTCTTGGGGCTTCAATCTGTGCGGAATTCCTTGGTTGGAACTGTGGAAAAGCGAGGGGTCTCTGGAGGCCAAAGGAAGCGTGTAAATGTTGGATTGGAAATGGTTATGGAACCTTCACTTTTGATCTTGGATGAACCCACCTCTGGCTTGGACAGTGCATCATCTCAGCTACTCCTAAGAGCACTAAGACGTGAAGCTCTTGAGGGAGTGAATATTTGCATGGTGGTTCACCAACCCAGCTATGCTTTGTTCAAGATGTTTGATGACTTGATACTTCTGGGTAAAGGTGGTCTTACTGTCTATCATGGATCTGCCAAGAAAGTTGAAGAATACTTTTCAGGCCTGGGGATCAATGTTCCAGAGCGGATTAATCCTCCAGATTACTTTATTGACATTTTGGAGGGTATAGCAGTACCTGGTGGAAGCTCAGGACTCAGTTATAAAGAACTGCCAATTAGATGGATGCTTCATAATGGATATCCAATACCTCTTGATATGAGGCAGAATGCAGAACAATTTCATATGTCCCAAAGTGTAAATTCAGCTAATGAAATAGATCATGATGGATCTGGTAATGTGGAAAAAACCTTTGCTGGAGAATTATGGCAAGATGTGAGAAACAATGTGGAACTGCAAGGGGAGAAGATAAGGTTCAATTTTTTGAAATCCAAGGATTTGTCTGACCGGAAAACTCCTGGTGTATTCAAGCAATATAAGTACTTTCTTATACGGGCTGGGAAGCAGCGATTACGGGAAGCTAGGATCCAAGCCATAGATTATCTTATTTTGTTACTTGCTGGAGCCTGCTTGGGATCACTTACCAAAGCAAGTGATCAAACGTTTGGTGCAGCTGGATACACCTATACGGTGATTGCTGTATCTCTTCTGTGCAAAGTAGCGGCCTTGAGATCATTTTCTCTGGATAAATTACACTACTGGAGGGAGAGTGATTCTGGCATGAGCAGCTTGGCTTATTTTCTTTCCAAAGACACAATTGATCATTTTAATACAGTTATCAAGCCTGTGGTGTACCTCTCTATGTTCTATTTCTTCACCAATCCAAGATCTACTTTTGGAGATAATTATGTTGTGCTGCTTTGTCTTGTGTACTGTGTGACTGGCATAGCATATGCACTGTCCATACTTTTTGAACCTGGTGCAGCCCAGCTGTGGTCAGTACTCCTTCCTGTTGTTTTGACTCTTATTGCAACACAACCAAAAGATAATAAAATTTTGAAGGATATAGCTAATTTATGCTACTCTAAGTGGGCTTTACAAGCATTTATTATTGCAAATGCTGAAAGGTATCAGGGAGTGTGGCTCATAAGTCGTTGTGGTTCACTTTTGAAAAGTGGCTATGATATTCATGATTGGAGTCTGTGCATATCCATCCTCATCCTTATGGGTGTAATTGCCCGGGCAATAGCATTTTTCTGTATGGTCACCTTCCAAAAGAAGTAA	3330	0.3997	MNSKHFLVLLWLLIVVLKCHCQEINDYDQIDNPAVLPLITQLVYSRISNLTSVLNQEITRDSNFCVKDPDSDWNQAFNFSSDLSFLTSCIKKTKGDITKRLCTAAEVKFYLNNLLEKSTSANYLKPNKNCNLTSWVSGCEPGWACSVHSSQKIDLKNSKEIPARTSNCQACCEGFFCPHGITCMIPCPLGSYCPLATLNKTTGICEPYLYQLPPMQPNHTCGGANIWADISSSGEMFCSAGSYCPTTTKRIPCSSGHYCRMGSTSEKRCFKLSSCNSNTATQNMHAYGIMLIAALSTLLLIIYNCSDQVLTTRERRIAKSREAAARSAKKTANAHQRWKFAKDAAKKGATGLQAQLSRKLSRKKETAHLGKVKILNQETSETDVELLSHSQPVTSSMVASSSVVPKESGKKPSGLMHIMHEIENDPYINDNPTIEIETRDKSVTGNVSKGKQPHTHTQIFKYAYTQLEKEKAQQQENKNLTFSGVIKMATNTEKRKRPFIEISFKDLTLTLKAQNKHILRNVTGKIKPGRITAVMGPSGAGKTTLLSALAGKAFGCLVTGSILINERNESIHSFKKIIGFVPQDDVVHGNLTVEENLWFSAQCRLSADLSKPEKVLVVERVIEFLGLQSVRNSLVGTVEKRGVSGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFKMFDDLILLGKGGLTVYHGSAKKVEEYFSGLGINVPERINPPDYFIDILEGIAVPGGSSGLSYKELPIRWMLHNGYPIPLDMRQNAEQFHMSQSVNSANEIDHDGSGNVEKTFAGELWQDVRNNVELQGEKIRFNFLKSKDLSDRKTPGVFKQYKYFLIRAGKQRLREARIQAIDYLILLLAGACLGSLTKASDQTFGAAGYTYTVIAVSLLCKVAALRSFSLDKLHYWRESDSGMSSLAYFLSKDTIDHFNTVIKPVVYLSMFYFFTNPRSTFGDNYVVLLCLVYCVTGIAYALSILFEPGAAQLWSVLLPVVLTLIATQPKDNKILKDIANLCYSKWALQAFIIANAERYQGVWLISRCGSLLKSGYDIHDWSLCISILILMGVIARAIAFFCMVTFQKK.	1110

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca7g07405	1109	Gene3D	-	500	737	IPR027417	-
	Seca7g07405	1109	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	502	743	IPR003439	GO:0005524
	Seca7g07405	1109	Coils	Coil	1108	1109	-	-
	Seca7g07405	1109	ProSitePatterns	ABC transporters family signature.	643	657	IPR017871	GO:0005524\|GO:0016887
	Seca7g07405	1109	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 28	240	1096	-	-
	Seca7g07405	1109	SMART	AAA_5	528	720	IPR003593	GO:0016887
	Seca7g07405	1109	Pfam	ABC-2 type transporter	700	1109	IPR043926	GO:0140359
	Seca7g07405	1109	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	502	735	IPR027417	-
	Seca7g07405	1109	FunFam	ABC transporter G family member 24	496	738	-	-
	Seca7g07405	1109	Pfam	ABC transporter	519	671	IPR003439	GO:0005524
	Seca7g07405	1109	CDD	ABCG_EPDR	500	726	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca7g07405	Seca-Chr7	177325945	177335213	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca7g07405	518	721	Calmodulin-binding Proteins	AT2G36910	26.009	4.90e-11	65.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca7g07405	-		-	gmx:100775464	1915.58