Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07377 ATGGCGGCTGCTTCCTCATCTTCACCATTCTTGGGAATCAGAGAAGCAAACGAAAGTCAGATTACACATCATCATCCATCCACCATATCTGCTTCTTCAGCTGCTCCCATCTTAGTGCCTCAAAAGAAAAGAAGGAATCAACCTGGAACACCAAATCCAGATGCGGAGGTGATAGCACTGTCTCCCAAGACACTAATGGCAACAAACAGATTCATATGTGAAGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACTTGCCTTGGAAGCTAAAGCAGAAGTCTACAAAAGAGCCAAGGAGAAAGGTGTATCTGTGTCCAGAACCCACATGCGTCCATCACGATCCTTCAAGGGCTTTGGGAGACCTCACTGGGATCAAGAAACACTACTCTCGCAAACATGGTGAGAAAAAATGGAAGTGTGAAAAGTGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAATACAGATGTGACTGTGGCACCCTCTTCTCTAGGCGTGACAGTTTTATCACTCATAGGGCCTTTTGTGATGCATTAGCTCAAGAGAGTGCAAGACACCCTAATGGGTTAAACCCTTTAGGGACTCATTTGTATGGCACAAATCACATGAGTTTAGGCCTATCCCAAGTGGGTAACCAAATTTCCCAATTCCAAAATCAGAACCAAACAGCTACTAACAACATGTTGCGCCTTGGCAATGGTGGTGCAACAAAGTTTGAGCACTTAAATATCCCACCTTTAAACCATCAATCTTCATTTGGAGTACAATCATCACCACAATCAATCCCTTCTTCAGCTTTCTTCATAACTGACACAAATCAAGCATTTGAACATCATCAACAATCCCCATTGATCTCAAGCAAGCAACTACATGGTCTAATGCAACTTCCTGATCTCCAAGGTAACCCCAATTCTTCCTCCAATCTCTTCAACCCCAGCTTCTTTCCAAATAGCAGTAACAACACTGACCAATTCAACCAAGGAACATCACTTTATATTAACAACAACCTTGTGAGTAGTAGTGATCAAGTTGTTGGTTCAGGTTTGTCATCACTCTTTGGCAACTCATCTTCATCAGTGCAACATGAAAACATGTCTCCTCATATGTCTGCCACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCAACAACAAGCACCACCAAAGGTGGTTCCTCTCTACTAATAAGAGGAATGTGTAGTAGTTCATCAACCTACAATGACCCCAAATCTGACACTGAAAGGGACATTGTATCTGCTGATAATATTGTTGCCACTTTTGGAAGTGACCATAGAAGGGGAGAAGGTATAAAATCAACCATGGAAAGTGACCACCACAATCTTCATGGGTTGATGAACTCTATTGCCAATGGGAACACATCCATATTTGGGAATGAAAGCAACCTTGGTCGGTTTCATAATGTGGAAGAATCTAACAATAAGTTGCACCAAAGTCTTAATGTGAGCTTTGGAGGTGGGTCTGATAAGTTGACATTAGATTTCTTGGGTGTTGGAGGAATGGTGAGAAATATGAATGGTGGATTTTCACAAAGTGAACAACAACGTGTCATGGGTACTATGAGTTCTTTGAATCCTGACCTAAAATCAGCACATTCAAGCCAACATTTTGGAAGCTCAACGATGCAATGA 1707 0.4212 MAAASSSSPFLGIREANESQITHHHPSTISASSAAPILVPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPNGLNPLGTHLYGTNHMSLGLSQVGNQISQFQNQNQTATNNMLRLGNGGATKFEHLNIPPLNHQSSFGVQSSPQSIPSSAFFITDTNQAFEHHQQSPLISSKQLHGLMQLPDLQGNPNSSSNLFNPSFFPNSSNNTDQFNQGTSLYINNNLVSSSDQVVGSGLSSLFGNSSSSVQHENMSPHMSATALLQKAAQMGSTTSTTKGGSSLLIRGMCSSSSTYNDPKSDTERDIVSADNIVATFGSDHRRGEGIKSTMESDHHNLHGLMNSIANGNTSIFGNESNLGRFHNVEESNNKLHQSLNVSFGGGSDKLTLDFLGVGGMVRNMNGGFSQSEQQRVMGTMSSLNPDLKSAHSSQHFGSSTMQ. 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07377 568 SMART c2h2final6 147 167 IPR013087 -
Seca7g07377 568 SMART c2h2final6 112 142 IPR013087 -
Seca7g07377 568 SMART c2h2final6 71 93 IPR013087 -
Seca7g07377 568 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Seca7g07377 568 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Seca7g07377 568 Gene3D Classic Zinc Finger 50 118 - -
Seca7g07377 568 Coils Coil 226 246 - -
Seca7g07377 568 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Seca7g07377 568 FunFam protein indeterminate-domain 12-like 50 118 - -
Seca7g07377 568 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Seca7g07377 568 MobiDBLite consensus disorder prediction 546 568 - -
Seca7g07377 568 Gene3D Classic Zinc Finger 125 204 - -
Seca7g07377 568 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Seca7g07377 568 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 536 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07377 Seca-Chr7 176917920 176922592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07377 41 230 IDZ Gene Family AT2G02070 83.085 1.77e-118 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g07377 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07377 K25870 - gmx:100780268 662.529