Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07376 ATGGGAAGAAAGGGCAGTTATGAAAAACAAGATGTGAACAGAGGCGCTTGGTCTTCTGAGGAAGACAAAATCCTTATGAACTACGTTCAAGTCCATGGGGAACGAAAATGGACTGAGCTTTCCAAAAGATCTGGCTTGAAGCGATGTGGGAAGAGTTGCAGGCTGAGATGGTTGAATTATCTCAAACCAGATATCAAGAGAGGAAACATTTCTTCGGATGAAGAAGACCTCATTATCAGATTACATAACCTCCTCGGGAATAGATGGGCTCTCATTGCGGGGCGAATACCAGGGCGCACTGACAATGAGATAAAAAATTATTGGAATACTTATTTGAGAAAGAAGGTAGAGCAGCAAGCCAACCATAACAAACTCCCACGCCATACCAACCAAATTCCAATCAATTTAAGAGTTGAATATTCTCCTGGCTCCTCAAAAAATAACCCCTTGGATATCATTCATCCTACAGAATCGGTTATGATGCCAAATAATAATAATAATAATGACTCAATAATCAACACAATGAATTTGGTTACAACAAGCTGTTGGGATCGCAAGAACATAAATGCTTCTGCTTCCACCCCACAAGGTGACTATAACATAAGTGACATGTTAATACCTTACGAGGATTTTCATTTTAATAGATATGCTTGTGTCCAAATACCCCAACAATTTGGAGATGATGCCTTTCGGCTTGATGGTTCAATCGCCAAAGAAGCATGGTATGAGAATTGGAAGATTGACGACTATTTTCCACTAGAACATGCTGTGGATTTTTCTTCATTTTCAAAGTTTCGGACTTGA 804 0.3955 MGRKGSYEKQDVNRGAWSSEEDKILMNYVQVHGERKWTELSKRSGLKRCGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHNLLGNRWALIAGRIPGRTDNEIKNYWNTYLRKKVEQQANHNKLPRHTNQIPINLRVEYSPGSSKNNPLDIIHPTESVMMPNNNNNNDSIINTMNLVTTSCWDRKNINASASTPQGDYNISDMLIPYEDFHFNRYACVQIPQQFGDDAFRLDGSIAKEAWYENWKIDDYFPLEHAVDFSSFSKFRT. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07376 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca7g07376 267 CDD SANT 16 61 IPR001005 -
Seca7g07376 267 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca7g07376 267 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca7g07376 267 Gene3D - 71 133 - -
Seca7g07376 267 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca7g07376 267 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca7g07376 267 Gene3D - 6 67 - -
Seca7g07376 267 FunFam MYB-related transcription factor 13 66 - -
Seca7g07376 267 SMART sant 66 114 IPR001005 -
Seca7g07376 267 SMART sant 13 63 IPR001005 -
Seca7g07376 267 CDD SANT 71 112 IPR001005 -
Seca7g07376 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca7g07376 267 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca7g07376 267 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07376 Seca-Chr7 176896816 176898853 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07376 9 120 MYB Transcription Factor Family AT3G13540 67.857 8.19e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g07376 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07376 K09422 - gmx:100780809 335.109