Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07373 ATGGGAAGAAAGGGCAGTGATGATGATAAACAAGCTGATCATATTGTGAATAGAGGTGCTTGGTCTTCTGAAGAAGACCAAATCCTTATCAACTACGTTCAAGTCTATGGGGAACGAAAATGGAGAGAGCTTTCGAAAAGAGCTGGCTTGAAACGAAGTGGGAAGAGTTGCAGACTGAGATGGTTGAATTATCTCAAACCAGATATCAAGAGAGGAAATATTTCTTTGGATGAAGAAGATCTCATTATCAGATTACATAACCTCCTCGGAAATAGGTGGTCTCTCATTGCGGGGCGATTACCAGGGCGAACTGATAATGAGATTAAGAATTATTGGAATACTTATTTGAGAAAGAAGGTAGAGCAAAATATTGCCAACCATAACAACCTCCCTGCAGGCTATACCAACAAAATTCCCTTCAAATTAAGAGTTGAATATTCTCCTGCAGGCTCCTCAAAAAATATTAACCCCTTGGATATCATTGATCCTACAGAATCGGTTATGGTGCCAAATAATATTAATGACTCAACCAACACAATGAATTTCATTAGCAAGAACAAGGACCCTTCTGCTTCCACCCCACAAGATGATCATGGCCATGGTTTTCTCAAAGACTTTGACATGTTAATTATACCCAATAATGATCATGAGGATTTTCATTTTAATAGAGTGCCCCTAAATGTTGGAGATGACGCCTTCAGGCTAATTGACGATTCAATCGGGGAAGCATGGTTTGAGAATTGGAAGATTGACGACTATTTGGTGTGA 768 0.3932 MGRKGSDDDKQADHIVNRGAWSSEEDQILINYVQVYGERKWRELSKRAGLKRSGKSCRLRWLNYLKPDIKRGNISLDEEDLIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKKVEQNIANHNNLPAGYTNKIPFKLRVEYSPAGSSKNINPLDIIDPTESVMVPNNINDSTNTMNFISKNKDPSASTPQDDHGHGFLKDFDMLIIPNNDHEDFHFNRVPLNVGDDAFRLIDDSIGEAWFENWKIDDYLV. 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07373 255 Gene3D - 74 137 - -
Seca7g07373 255 CDD SANT 20 65 IPR001005 -
Seca7g07373 255 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Seca7g07373 255 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Seca7g07373 255 Pfam Myb-like DNA-binding domain 71 116 IPR001005 -
Seca7g07373 255 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Seca7g07373 255 Gene3D - 18 70 - -
Seca7g07373 255 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 15 151 - -
Seca7g07373 255 SUPERFAMILY Homeodomain-like 17 112 IPR009057 -
Seca7g07373 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Seca7g07373 255 CDD SANT 75 116 IPR001005 -
Seca7g07373 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Seca7g07373 255 SMART sant 17 67 IPR001005 -
Seca7g07373 255 SMART sant 70 118 IPR001005 -
Seca7g07373 255 FunFam MYB-related transcription factor 17 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07373 Seca-Chr7 176869521 176871163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07373 16 131 MYB Transcription Factor Family AT3G13540 65.812 3.37e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g07373 Myb_DNA-binding 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07373 K09422 - gmx:547459 291.582