Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07347 ATGATACAGGAAGATCATCAAGGACAGTGTTCTTCTCAAACCATCAACAACTTTCAAACCTATCAAGAGCAGTTTCTCCTTCAACAACAGATGACACAACAAAACGGTGGTGATTTCTATGGTGGAGGAGGAGGAAGAGTTGGCTTCAATATGTTTCCTTCTAATAGTGAAGTTTTGCAACCATGGTGTATGCCTCATCATCAGGTTCACCCTTTCAACCCTGTGAGAGAGCATGATCCATTTGTTGTCCCTTCTTCACCTTATGCAAGTTTGTTCAATAGAAGGGTTCCTTCTCTTCAGTTTGCATATGAGGGTCCATCATCTTCTGATCTGAGGATCATATCAGATACCCTTGGAGTTGCAGGTTCATCAGCACCTTTTGGTCTCCAAGCTGAGCTGGGAAAGATGACTGCTCAAGAAATCATGGAAGCTAAGGCTCTTGCAGCATCCAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAATAACCATCTTGCTAAGCTCCGCAGCTTGTTGCCCAACACTACCAAATTCCGAGGGAGGAAAAGTAATTAA 564 0.4362 MIQEDHQGQCSSQTINNFQTYQEQFLLQQQMTQQNGGDFYGGGGGRVGFNMFPSNSEVLQPWCMPHHQVHPFNPVREHDPFVVPSSPYASLFNRRVPSLQFAYEGPSSSDLRIISDTLGVAGSSAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKFRGRKSN. 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07347 187 Gene3D - 143 187 IPR036638 GO:0046983
Seca7g07347 187 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 187 IPR011598 GO:0046983
Seca7g07347 187 PANTHER TRANSCRIPTION FACTOR BHLH30 17 180 IPR045847 GO:0003700|GO:0006355
Seca7g07347 187 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 181 IPR036638 GO:0046983
Seca7g07347 187 Pfam Helix-loop-helix DNA-binding domain 151 177 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07347 Seca-Chr7 176527160 176529824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07347 11 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 48.438 2.73e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g07347 HLH 4.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07347 - - var:108324711 206.068