Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07345 ATGGCTTCATCGATTAGAGTAGACTGTAATTTTCTCTTTGAATTCCTAGTGCCCAACAGGAAGTATGAGAAATTAGCTGACGTGGATGAAGAGTTCATTTCAGAATATTCCAGCCAAGTAGGTGAGTTTTGGACAGTGAAAGATCCTAAAGGACAGTTACATACGATACGCTACAAATACAATCGTCGTTTGGATCGACCTCGGATCATTGGTGGGTGGATGGAACTAAGGGATTTTTATAGCCTTGAGGGAAATTGCTTAGTGTTGTTCCGTTACCTTGGTGGTTCCGAATTCAACATTTACATTCTTGACCACAACAAAAAGCAGATAAGTTACGATTATTCCCCTGCTCCAATCCACCCACCATTTTCATCTTCCTACATTGCTCAATGCGACATCCAATTAACCACTACCATGACATTGCCTCCTCAAATTGGTGCATTAGTGAGGAGGTCAGGTTCTCAAAAGTACCACTTGATTGGACCCAGTGGACATAGTATTGGATGTAATGTGTTTGCCCCCCAAAATCAAGGTTCTACAAAGCTTGGAAATGGCTGGAGGAATTTCTGCCGAGTCAATGAAGTTCAGGCTAATGACATTCTTACTTTCAAGTTTACAAGTCTAGAAGATGGAATAGTGCATGTCTTTATTGAGCGTCCTATAGCTTGA 669 0.4126 MASSIRVDCNFLFEFLVPNRKYEKLADVDEEFISEYSSQVGEFWTVKDPKGQLHTIRYKYNRRLDRPRIIGGWMELRDFYSLEGNCLVLFRYLGGSEFNIYILDHNKKQISYDYSPAPIHPPFSSSYIAQCDIQLTTTMTLPPQIGALVRRSGSQKYHLIGPSGHSIGCNVFAPQNQGSTKLGNGWRNFCRVNEVQANDILTFKFTSLEDGIVHVFIERPIA. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07345 222 PANTHER B3 DOMAIN-CONTAINING 54 215 - -
Seca7g07345 222 Pfam B3 DNA binding domain 139 216 IPR003340 GO:0003677
Seca7g07345 222 CDD B3_DNA 45 104 IPR003340 GO:0003677
Seca7g07345 222 SUPERFAMILY DNA-binding pseudobarrel domain 28 106 IPR015300 -
Seca7g07345 222 SUPERFAMILY DNA-binding pseudobarrel domain 130 217 IPR015300 -
Seca7g07345 222 ProSiteProfiles B3 DNA-binding domain profile. 124 221 IPR003340 GO:0003677
Seca7g07345 222 Gene3D - 119 219 IPR015300 -
Seca7g07345 222 Gene3D - 9 107 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07345 Seca-Chr7 176513765 176514869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07345 23 112 B3 DNA Binding Superfamily AT3G18990 28.889 3.39e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca7g07345 B3 1.2e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07345 - K14616 vun:114169435 82.4185