Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07342 ATGGCTGGACCATCATGGTTGGTGGACAAAAGTAGAATTGCAACCAAAATAAAGAGTGCATCTGGAGCATGTGGAAAAGTTATATGGAAAAGCAATCCCACAAGAGCTTGCCCAAATTGTCAACATGTTATCGACAACAGTGATGTAGCACAAGAGTGGCCTGGACTACCTAAAGGTGTTAAATTTGATCCATCTGATCAAGAGATAATATGGCACTTGCTTGCAAAAGTTGGTGCAGGAAATTCAAAACCCCACCCTTTCATAGATGAATTTATTACTACTCTTGAAGTGGAAGATGGCATTTGTTATACTCATCCTCAACATTTACCAGGTGTCAAGCAAGATGGAAGTGCTTCCCACTTTTTCCATAGAGCAATCAAAGCTTATAATACTGGCAGTCGAAAGCGTCGAAAAATATATGGACAGGATTTTGGTGATGTCCGCTGGCACAAGACTGGAAAGACTAAACCTGTCATCATGAATGGGGTTCAAAAAGGCTGTAAAAAAATTATGGTTCTGTATATGATCCTGGTTAGGGGAGGAAAAGCTGAGAAAACTAATTGGGTTATGCATCAATATCATCTAGGAACAGAAGAGGATGAAAAGGATGGAGAGTATGTTATCTCTAAAGTGTTTTACCAGCAGCAGCAGATCAAATTGGGTGAAAAGGATGATCAGGATATTCCTGAAACCACTGAAGCAACTACTGTGAAAGTGGATCCAGTTATTGAAAAAGATGAGCAGGATATTCCTGAAACCACCGAAGCAACTATCGTGAAAGTGGATCCAATTACTCCCAAATCTGTCACTCCTGAACCCCCTCGTAATGAAAAACGATGTTCAGATCTAGATCCAGAACAAGAATCACATCATATTCCTCAGTTTGATGGTCTAGATAATATTCGGGCTGGCTGTGAAGAGTTTGCAAAAAATGATCAATCAATGGTAGAAACTCATAATAATGAAGGGATAGATAGTATAGAAAATAATGTTAATGAAGACTCAAAATGGTGGGATAGTGAGTCACAGAATCTGTTGGATTCACAGCAACTTGTTGAAGCATTGTCCTTGTGTGATGATCTCCTTCAAAGCCAGTCTCCCAATAGGGATGGTGAAAATGGAGAACATAAGGAGCGACCTAGTCTTTCTGTATATGCTCATCTAGGACCAGAGCATCTGAAGAAAGATATTGAAGATTGCCAAAATCTTGTCCTTGATACTACAAATGTAGGGCTTGAGACGCCACCTTCAGAGTTTCGACTAAGTCAGCTGGAATTCAGCTCACAGGATAGCTTTATTTCCTGGGGTGGCAACAAGGCAGTCAACTAA 1329 0.4026 MAGPSWLVDKSRIATKIKSASGACGKVIWKSNPTRACPNCQHVIDNSDVAQEWPGLPKGVKFDPSDQEIIWHLLAKVGAGNSKPHPFIDEFITTLEVEDGICYTHPQHLPGVKQDGSASHFFHRAIKAYNTGSRKRRKIYGQDFGDVRWHKTGKTKPVIMNGVQKGCKKIMVLYMILVRGGKAEKTNWVMHQYHLGTEEDEKDGEYVISKVFYQQQQIKLGEKDDQDIPETTEATTVKVDPVIEKDEQDIPETTEATIVKVDPITPKSVTPEPPRNEKRCSDLDPEQESHHIPQFDGLDNIRAGCEEFAKNDQSMVETHNNEGIDSIENNVNEDSKWWDSESQNLLDSQQLVEALSLCDDLLQSQSPNRDGENGEHKERPSLSVYAHLGPEHLKKDIEDCQNLVLDTTNVGLETPPSEFRLSQLEFSSQDSFISWGGNKAVN. 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07342 442 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 401 IPR044799 GO:0003700
Seca7g07342 442 MobiDBLite consensus disorder prediction 272 293 - -
Seca7g07342 442 MobiDBLite consensus disorder prediction 363 382 - -
Seca7g07342 442 FunFam NAC domain-containing protein 8 65 218 - -
Seca7g07342 442 ProSiteProfiles NAC domain profile. 56 214 IPR003441 GO:0003677|GO:0006355
Seca7g07342 442 MobiDBLite consensus disorder prediction 261 293 - -
Seca7g07342 442 Pfam No apical meristem (NAM) protein 57 195 IPR003441 GO:0003677|GO:0006355
Seca7g07342 442 Gene3D NAC domain 65 219 IPR036093 GO:0003677|GO:0006355
Seca7g07342 442 SUPERFAMILY NAC domain 41 214 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07342 Seca-Chr7 176463100 176468621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07342 28 221 NAC Transcription Factor Family AT1G28470 57.000 9.48e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca7g07342 NAM 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07342 - - gmx:100787422 735.717