Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca7g07337 | ATGGATGGAGGCAGTTGCACAGACGAAACCACCACAAGCAGCGACTCCCTTTCCATATCCCTTACTCCGGCGAAGCTATCTCCACCACCACCGAACACTCTCAGCCGCTTAGGCAGCGGCGCCAGTGCCATCGTGGATCCCGACAGTGGCGGCGGATCCGGCGAGGCCGAATCCAGGAAACTTCCGTCGTCGAAATACAAAGGCGTGGTGCCCCAGCCTAACGGCCGTTGGGGAGCTCAGATATACGAGAAACACCAGCGCGTGTGGCTCGGTACCTTCAACGACGAAGATGAAGCTGCCAGAGCCTACGACATCGCCGCGCAGAGGTTCCGCGGCAAAGACGCCGTCACCAACTTCAAGCCTCTCACTGACGACGCCGAAACTGACTTCCTCAACTCGCATTCCAAATCTGAGATCGTCGACATGCTCCGGAAGCACACTTACGACGACGAGCTACAACAGAGCAAGCGCGGCGGCAAGTGCGGCGGAAGGCAGCGGCGCAACGGCGAAACTGCCGCGACGGCGTCGTTTGAATCTGGTGGCGCGTGCGATGCGAAGGCGCGTGAGCAGTTGTTTGAGAAAACGGTTACTCCGAGTGACGTAGGGAAGTTGAATCGGTTGGTGATACCGAAACAGCACGCGGAGAAGCATTTTCCGTTAGGCGGCGCCGGCGACGGAATCTCGCCGTGCGCGGTGGCGGCGAAGGGCGTGCTTTTGAATTTCGAAGACGTAGGAGGGAAAGTGTGGCGGTTTCGTTACTCGTATTGGAATAGTAGCCAGAGCTACGTGTTAACGAAGGGGTGGAGCCGGTTCGTGAAGGAGAAGAACCTCAGGGCCGGTGATGCGGTTCGGTTCTTCAGGTCAACCGGACCGGACCGGCAGCTCTACATAGATTGCAAGGCCAGGAGTAATGGTAAACACGGTGGTTTGTTTATTCCGGTCGGACCGGTGGTTGAGCCGGTTCAGATGGTTCGGCTTTTTGGGGTCAACCTTTTAAAACTACCTGGTTCTGATGGCGTTGGGGGTGGCTGTAATGGGAAGAGGAAAGAGATGGAACTGTTTACCTTAGAATGTAGCAAAAAGCCAAAGATAATTGGAGCTTTGTAA | 1107 | 0.5628 | MDGGSCTDETTTSSDSLSISLTPAKLSPPPPNTLSRLGSGASAIVDPDSGGGSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNDEDEAARAYDIAAQRFRGKDAVTNFKPLTDDAETDFLNSHSKSEIVDMLRKHTYDDELQQSKRGGKCGGRQRRNGETAATASFESGGACDAKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLGGAGDGISPCAVAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRFFRSTGPDRQLYIDCKARSNGKHGGLFIPVGPVVEPVQMVRLFGVNLLKLPGSDGVGGGCNGKRKEMELFTLECSKKPKIIGAL. | 369 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca7g07337 | 368 | Gene3D | AP2/ERF domain | 64 | 121 | IPR036955 | GO:0003700|GO:0006355 | |
Seca7g07337 | 368 | ProSiteProfiles | B3 DNA-binding domain profile. | 192 | 303 | IPR003340 | GO:0003677 | |
Seca7g07337 | 368 | SMART | rav1_2 | 65 | 126 | IPR001471 | GO:0003700|GO:0006355 | |
Seca7g07337 | 368 | CDD | B3_DNA | 191 | 288 | IPR003340 | GO:0003677 | |
Seca7g07337 | 368 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 60 | 342 | IPR044800 | GO:0003700 | |
Seca7g07337 | 368 | MobiDBLite | consensus disorder prediction | 151 | 175 | - | - | |
Seca7g07337 | 368 | SUPERFAMILY | DNA-binding domain | 64 | 120 | IPR016177 | GO:0003677 | |
Seca7g07337 | 368 | SUPERFAMILY | DNA-binding pseudobarrel domain | 190 | 301 | IPR015300 | - | |
Seca7g07337 | 368 | FunFam | AP2 domain-containing protein RAP2.8 | 64 | 121 | - | - | |
Seca7g07337 | 368 | Pfam | B3 DNA binding domain | 192 | 293 | IPR003340 | GO:0003677 | |
Seca7g07337 | 368 | CDD | AP2 | 64 | 119 | IPR001471 | GO:0003700|GO:0006355 | |
Seca7g07337 | 368 | Gene3D | - | 181 | 309 | IPR015300 | - | |
Seca7g07337 | 368 | SMART | B3_2 | 192 | 302 | IPR003340 | GO:0003677 | |
Seca7g07337 | 368 | ProSiteProfiles | AP2/ERF domain profile. | 65 | 120 | IPR001471 | GO:0003700|GO:0006355 | |
Seca7g07337 | 368 | Pfam | AP2 domain | 64 | 112 | IPR001471 | GO:0003700|GO:0006355 | |
Seca7g07337 | 368 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Seca7g07337 | 368 | MobiDBLite | consensus disorder prediction | 1 | 72 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca7g07337 | Seca-Chr7 | 176379068 | 176380655 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca7g07337 | 5 | 368 | B3 DNA Binding Superfamily | AT1G25560 | 61.053 | 2.92e-144 | 411 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-RAV | Seca7g07337 | B3 | 5.2e-26 | CL0405 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca7g07337 | K09287 | - | gmx:100789009 | 536.954 |