Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07337 ATGGATGGAGGCAGTTGCACAGACGAAACCACCACAAGCAGCGACTCCCTTTCCATATCCCTTACTCCGGCGAAGCTATCTCCACCACCACCGAACACTCTCAGCCGCTTAGGCAGCGGCGCCAGTGCCATCGTGGATCCCGACAGTGGCGGCGGATCCGGCGAGGCCGAATCCAGGAAACTTCCGTCGTCGAAATACAAAGGCGTGGTGCCCCAGCCTAACGGCCGTTGGGGAGCTCAGATATACGAGAAACACCAGCGCGTGTGGCTCGGTACCTTCAACGACGAAGATGAAGCTGCCAGAGCCTACGACATCGCCGCGCAGAGGTTCCGCGGCAAAGACGCCGTCACCAACTTCAAGCCTCTCACTGACGACGCCGAAACTGACTTCCTCAACTCGCATTCCAAATCTGAGATCGTCGACATGCTCCGGAAGCACACTTACGACGACGAGCTACAACAGAGCAAGCGCGGCGGCAAGTGCGGCGGAAGGCAGCGGCGCAACGGCGAAACTGCCGCGACGGCGTCGTTTGAATCTGGTGGCGCGTGCGATGCGAAGGCGCGTGAGCAGTTGTTTGAGAAAACGGTTACTCCGAGTGACGTAGGGAAGTTGAATCGGTTGGTGATACCGAAACAGCACGCGGAGAAGCATTTTCCGTTAGGCGGCGCCGGCGACGGAATCTCGCCGTGCGCGGTGGCGGCGAAGGGCGTGCTTTTGAATTTCGAAGACGTAGGAGGGAAAGTGTGGCGGTTTCGTTACTCGTATTGGAATAGTAGCCAGAGCTACGTGTTAACGAAGGGGTGGAGCCGGTTCGTGAAGGAGAAGAACCTCAGGGCCGGTGATGCGGTTCGGTTCTTCAGGTCAACCGGACCGGACCGGCAGCTCTACATAGATTGCAAGGCCAGGAGTAATGGTAAACACGGTGGTTTGTTTATTCCGGTCGGACCGGTGGTTGAGCCGGTTCAGATGGTTCGGCTTTTTGGGGTCAACCTTTTAAAACTACCTGGTTCTGATGGCGTTGGGGGTGGCTGTAATGGGAAGAGGAAAGAGATGGAACTGTTTACCTTAGAATGTAGCAAAAAGCCAAAGATAATTGGAGCTTTGTAA 1107 0.5628 MDGGSCTDETTTSSDSLSISLTPAKLSPPPPNTLSRLGSGASAIVDPDSGGGSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNDEDEAARAYDIAAQRFRGKDAVTNFKPLTDDAETDFLNSHSKSEIVDMLRKHTYDDELQQSKRGGKCGGRQRRNGETAATASFESGGACDAKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLGGAGDGISPCAVAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRFFRSTGPDRQLYIDCKARSNGKHGGLFIPVGPVVEPVQMVRLFGVNLLKLPGSDGVGGGCNGKRKEMELFTLECSKKPKIIGAL. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07337 368 Gene3D AP2/ERF domain 64 121 IPR036955 GO:0003700|GO:0006355
Seca7g07337 368 ProSiteProfiles B3 DNA-binding domain profile. 192 303 IPR003340 GO:0003677
Seca7g07337 368 SMART rav1_2 65 126 IPR001471 GO:0003700|GO:0006355
Seca7g07337 368 CDD B3_DNA 191 288 IPR003340 GO:0003677
Seca7g07337 368 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 60 342 IPR044800 GO:0003700
Seca7g07337 368 MobiDBLite consensus disorder prediction 151 175 - -
Seca7g07337 368 SUPERFAMILY DNA-binding domain 64 120 IPR016177 GO:0003677
Seca7g07337 368 SUPERFAMILY DNA-binding pseudobarrel domain 190 301 IPR015300 -
Seca7g07337 368 FunFam AP2 domain-containing protein RAP2.8 64 121 - -
Seca7g07337 368 Pfam B3 DNA binding domain 192 293 IPR003340 GO:0003677
Seca7g07337 368 CDD AP2 64 119 IPR001471 GO:0003700|GO:0006355
Seca7g07337 368 Gene3D - 181 309 IPR015300 -
Seca7g07337 368 SMART B3_2 192 302 IPR003340 GO:0003677
Seca7g07337 368 ProSiteProfiles AP2/ERF domain profile. 65 120 IPR001471 GO:0003700|GO:0006355
Seca7g07337 368 Pfam AP2 domain 64 112 IPR001471 GO:0003700|GO:0006355
Seca7g07337 368 MobiDBLite consensus disorder prediction 1 23 - -
Seca7g07337 368 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07337 Seca-Chr7 176379068 176380655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07337 5 368 B3 DNA Binding Superfamily AT1G25560 61.053 2.92e-144 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Seca7g07337 B3 5.2e-26 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07337 K09287 - gmx:100789009 536.954