Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07335 ATGTATAATTTCACTGAGAAAATGCAGCGCCTGAAGATGGGGTTCCCTGAATACATCCAAGCATTGGAAGAAGAACGCCGTAAGATTCAGGTGTTCCCTAAAGAGCTTCCTCTTTCATTGGAGCTCATCACTCAAGCCATTGAAGCTTGTAAGCAGCAATTGTCTGGTACAACAACTGAGTATAATTTGAATGGCCAATCGGAGTGTTCAGAGCAGACAACATCAACGGAAGGTCCTGTTTTGGAGGAGTTCATTCCAATCAAGAAAAGGGCTTCACCTTATTGTGATGAAGATGATGAAGATGAGCAACATTCTCATAAACAGAAGATTTCAAAGGATAATAATAAGAACAGTGATAAAAGGAAATCGGATTGGCTTAGATCTGTTCAGTTATGGAATCCAGATCCCTCAGCAGAGGAGGATATGAATAGGAAAGTGCCTTTGAAGGAATTGAAGAGAAGTGGAAATGGCGGTGGTGCTTTTCAGCCATTCCATAAAGAAGAAAAAGCTGAAAAGACAAGTGAATCGTTGAATAAAGAACCCTCTTTGACTCAGGTAGCTGCTGCAAGTTCTACGGCGGCGACAGTAACCAGCAACAATGCTGGAAGCAGCAAAAAAGAGGAGAAAGATGGGCAGAGAAAGCAGCGTAGGTGCTGGTCACAGGACCTGCATAAGCGCTTCTTGCATGCCCTTCAGCAGCTTGGGGGTCCAGATTCTGCCACACCAAAGCAAATCAGAGAGGTAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTACAGAAATACCGTTTGCACACTAGAAGACCAAGTCCAGCAGTTCATGACAGTGCCAATTCACAAACAACACCTTTTGTCCTTGTAGGGAACATTTTTGTTCAACCACCAGAATATGCAGCTGTTGCTACCTCATCAGGGGAACTGACCAAGGTTGTGGCACCTGCTGGAATTTATGCACCGGTGGCCACACATCCTCCAGCTGTTTCACACACAGTACCTGCTTCAATTAAGAAGGCAGAGTTTAAGAAAGTGGAGCTGTTTGAGCATTCAAACTCAGAAGAAAGGGCTAATCATCACAGTGAAGGGGCTACTCATTCAAACTCCCCTTCTTCTTCATCCTCCACACATACCACTACTAATTCCCCTGGCCATTGA 1164 0.4416 MYNFTEKMQRLKMGFPEYIQALEEERRKIQVFPKELPLSLELITQAIEACKQQLSGTTTEYNLNGQSECSEQTTSTEGPVLEEFIPIKKRASPYCDEDDEDEQHSHKQKISKDNNKNSDKRKSDWLRSVQLWNPDPSAEEDMNRKVPLKELKRSGNGGGAFQPFHKEEKAEKTSESLNKEPSLTQVAAASSTAATVTSNNAGSSKKEEKDGQRKQRRCWSQDLHKRFLHALQQLGGPDSATPKQIREVMNVDGLTNDEVKSHLQKYRLHTRRPSPAVHDSANSQTTPFVLVGNIFVQPPEYAAVATSSGELTKVVAPAGIYAPVATHPPAVSHTVPASIKKAEFKKVELFEHSNSEERANHHSEGATHSNSPSSSSSTHTTTNSPGH. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07335 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 271 IPR017930 -
Seca7g07335 387 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 351 IPR044787 GO:0003700|GO:0006355
Seca7g07335 387 SUPERFAMILY Homeodomain-like 212 272 IPR009057 -
Seca7g07335 387 Gene3D - 213 271 - -
Seca7g07335 387 MobiDBLite consensus disorder prediction 365 387 - -
Seca7g07335 387 MobiDBLite consensus disorder prediction 350 387 - -
Seca7g07335 387 FunFam Myb family transcription factor 213 271 - -
Seca7g07335 387 MobiDBLite consensus disorder prediction 63 217 - -
Seca7g07335 387 MobiDBLite consensus disorder prediction 89 126 - -
Seca7g07335 387 MobiDBLite consensus disorder prediction 63 79 - -
Seca7g07335 387 Pfam Myb-like DNA-binding domain 216 267 IPR001005 -
Seca7g07335 387 MobiDBLite consensus disorder prediction 177 202 - -
Seca7g07335 387 MobiDBLite consensus disorder prediction 203 217 - -
Seca7g07335 387 MobiDBLite consensus disorder prediction 350 364 - -
Seca7g07335 387 NCBIfam myb-like DNA-binding domain, SHAQKYF class 214 269 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07335 Seca-Chr7 176351548 176354033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07335 2 264 G2-like Transcription Factor Family AT1G25550 53.731 1.07e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca7g07335 Myb_DNA-binding 2.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07335 - - aprc:113872943 578.941