Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07303 ATGCAATCTTCCGCCGACGACCATAGCGGCAGTTCCACCACCACCAACACAGCCTCAGAGTCAGAGTGGACATCATTCACTAACAATAAGTCCTCCTCCTCCGACCCCTGTTGGGACGCCATACGACGCTTCGAGTCCGACGGCGGCGGACTCAGCGACCTCCGGTTTGTCAACCGCCTCGGAAGCGGAGACGTAGGGAGCGTTTACCTGGTGGAGGTGAAAGGCTGCCTGTTCGCTGCGAAGGTGATGGATAAGAAGGAGTTGCTGACTAGGAACAAAGAAAGCAGAGCAAAGGTAGAGATGGAGGTTTTGCAAGTTTTGGACCATCCTTTTTTGCCTACTCTTTATGCAACACTTGAAACCCCACGGTGGTCATGCCTCCTCACTCAGTTTTGCCCCGGCGGCGACCTCCACGTCCTTCGCCAGCGCCAACCGGAAAAACGCTTCCACGAAGCTGCCGTTAGGTTCTACGCATCTGAAGTGGTGGCTGCCTTGGAGTACCTACACATGATGGGGATAATATACCGTGATTTGAAGCCTGAAAATGTGCTCATAAGATCGGACGGTCATATAATGCTCACTGATTTTGATCTCTCCCTAAAAGGTGATGATACCTCATCAACAGCTCAAATTGTCTTTGATCAAGATCCACCCACCAACACTAGTTGTTCCAATGAACATTCCAAGAACCAATGTGCATCTGCCATGTCATCATGCATCTTGCCCAATTGCATCGTGCCATCTGTCTCATGCTTCCACCCAAAACGCACTTGTAAGAAAAAAAGGTCATCCCGTTGTGGGTCCCTTGAGATCATAGCCGAGCCAATAGAAATCCGATCCATGTCCTTCGTTGGGACCCACGAGTATTTGGCGCCAGAGGTAGTTTCTGGTGAAGGGCACGGTAACGGCGTTGATTGGTGGACGTTAGGAGTGTTTATTTTCGAACTGTTCTATGGGATCACACCGTTCAAAGGGCTTGACCATGAGCTAACCTTAACCAACATAGTGGCTCGTGCTCTTGAGTTTCCTAAGGAGCCTATGGTCCCTGGAGCGGCTAGGGATTTGATTGCACAACTATTGGTGAAGGACTCAACAATAAGACTAGGGTCTACAATGGGTGCTGTGGCAATAAAGCACCATCCATTTTTCAATGGGGTTAATTGGGCATTGTTGAGATGTGCCACCCCGCCATACATCCCATCACCAGAAAAGTGCAAGGAGTTGGTTCGAGTCTATAATTGCACAAACAATGCAATTGATTTCTATTAG 1269 0.4933 MQSSADDHSGSSTTTNTASESEWTSFTNNKSSSSDPCWDAIRRFESDGGGLSDLRFVNRLGSGDVGSVYLVEVKGCLFAAKVMDKKELLTRNKESRAKVEMEVLQVLDHPFLPTLYATLETPRWSCLLTQFCPGGDLHVLRQRQPEKRFHEAAVRFYASEVVAALEYLHMMGIIYRDLKPENVLIRSDGHIMLTDFDLSLKGDDTSSTAQIVFDQDPPTNTSCSNEHSKNQCASAMSSCILPNCIVPSVSCFHPKRTCKKKRSSRCGSLEIIAEPIEIRSMSFVGTHEYLAPEVVSGEGHGNGVDWWTLGVFIFELFYGITPFKGLDHELTLTNIVARALEFPKEPMVPGAARDLIAQLLVKDSTIRLGSTMGAVAIKHHPFFNGVNWALLRCATPPYIPSPEKCKELVRVYNCTNNAIDFY. 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07303 422 SMART serkin_6 54 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07303 422 Gene3D Transferase(Phosphotransferase) domain 1 136 212 - -
Seca7g07303 422 Gene3D Transferase(Phosphotransferase) domain 1 279 401 - -
Seca7g07303 422 Gene3D Phosphorylase Kinase; domain 1 53 135 - -
Seca7g07303 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Seca7g07303 422 FunFam Serine/threonine-protein kinase OXI1 136 204 - -
Seca7g07303 422 Pfam Protein kinase domain 280 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07303 422 Pfam Protein kinase domain 57 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07303 422 CDD STKc_phototropin_like 52 402 - -
Seca7g07303 422 ProSiteProfiles Protein kinase domain profile. 54 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07303 422 SUPERFAMILY Protein kinase-like (PK-like) 45 404 IPR011009 -
Seca7g07303 422 PANTHER FLIPPASE KINASE 1-RELATED 13 402 - -
Seca7g07303 422 FunFam serine/threonine-protein kinase D6PK-like 278 401 - -
Seca7g07303 422 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07303 Seca-Chr7 175970196 175972616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07303 56 422 AGC Kinase Gene Family AT3G44610 63.874 2.70e-178 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca7g07303 Pkinase 2.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07303 K08286 - gmx:100786154 682.559