Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07291 ATGATTTCATCAGGTATTAACTTGGTGATGACTGTGATTGGGTTTGCGGTGAGCACCATGTTCATTTTTTTCGTCTGCACCAGACTCATCTGTGCTCGAATTCACTTGAATGCTTCAAGGAGAGCCTTTCGTATTGCTTCCAGATCCAATCTCAGCATGATGGAGCGGGGTAGCCATGGTCTTGAAAGCATAGCTGTCTCCAAATTTCCAACAAAGAAGTTCAGTGACAAATTTTTTGCTTCTGCAGAAAATTCTCAATGCACAGTCTGCCTCTCAGAGTACCAAGATGATGATATGCTGCGTATCCTCCCCTATTGTGGACACTCCTTCCATGTGACATGCATAGACTTGTGGCTTCAGCAGAACTCCACTTGTCCTGTTTGTCGAATATCACTGAGTGAATTTCCTGAGAGAAAGCGATTAATGCAACCCCAGTTCAGCTCTGCCTTGCAACCTCATAATGGCATGGAGTCCTTTGACACTCAACATTATCACTGTATAATGGTTGATAATGGATTATCATCAAGAACTCCTGAGAATGATGGGGTGAACCCTGTACAAGAGAATCATTTTCCATCTGAGGGTGATGGAGCAGTTGCTATAGACAATATCACCTGTTTAAGTCAGGGTGATTTCATTAAAGATGAAGGGAAGAAGCATGTAGAGAGCCCATCAAATTTCTAG 684 0.4284 MISSGINLVMTVIGFAVSTMFIFFVCTRLICARIHLNASRRAFRIASRSNLSMMERGSHGLESIAVSKFPTKKFSDKFFASAENSQCTVCLSEYQDDDMLRILPYCGHSFHVTCIDLWLQQNSTCPVCRISLSEFPERKRLMQPQFSSALQPHNGMESFDTQHYHCIMVDNGLSSRTPENDGVNPVQENHFPSEGDGAVAIDNITCLSQGDFIKDEGKKHVESPSNF. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07291 227 PANTHER OS11G0150450 PROTEIN 1 188 - -
Seca7g07291 227 Pfam Ring finger domain 86 129 IPR001841 -
Seca7g07291 227 CDD RING-H2_EL5-like 86 129 - -
Seca7g07291 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 134 IPR013083 -
Seca7g07291 227 FunFam E3 ubiquitin-protein ligase ATL6 49 135 - -
Seca7g07291 227 SUPERFAMILY RING/U-box 81 135 - -
Seca7g07291 227 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Seca7g07291 227 SMART ring_2 87 128 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07291 Seca-Chr7 175856447 175858870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07291 3 133 C3H Transcription Factor Family AT1G04360 34.483 4.29e-21 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07291 - - gmx:100794979 410.609