Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07285 ATGATGGTAAACCAAAGGATTGAACAACATATTATGTCAAAAGAGAAAAAGAACAAGAACAAGAACAAGAAAAAGAAGAGGAAGAATGAAGTTTTGCTTCCTCGTCCTGCATGCTCATGGGTGTATTTTAGCAAGGAGTTTATCAAAGAGTACATTGCCTCCCATCCTGAGTCATCAGGCCTTAAAGCTGCAACAAAGGCTGCCTCATATGCTTGGAAGTCTATGAGTCTTGAGGAGAAGGAAAAATACACTAGACATGCTCGTGAAGTGTGGGATGGCTACTTGAGTTCGGGTGCTGCCCCTATCACCAAGCCAAGGAAACAGCGCCTCATGCCTGAACAGAAGGAAGCAGTTAAGAGCATGGGATTTGGCAGTCTCCTTGGCCTTAGATGCCGAACGCTTCGGCGCAGTTTGTGTCTTTGGTTATTGGAGAGGTTTGACACTATTAATTGCAGCTTGGAGATCTGCAATGAGCACATGCCATTAACTCCAAAAGATGTGGAGATAGTAATGGGATTGTCAGCCAGTGGGAAAGAAGTGGTGAACTCAGGTCCAGAAGACTTGATTTCAGGTTTACGTAGCAGTTATAATGCGACAAATCATGGAATTTCAGTGCGGCTTTTGGAGGAGAGGTTGGCAACTGCAGAGGCTGGAGATGATTTTAAGATGTCATTTGTTCTCTATGTGCTGGGAACGCTTCTGTCCCCAACAGCTAGGCTGGATGTTAGCCCATCATTCCTCCATTTTTTGACAAATATGGATCTTGTCCATCAGTTCGACTGGGGTAAATTCTTGCTTGATAGGCTGGTTCGAGAGGTATCACGCTTCCGTCAAGGGAAGCAAAGAGCTGTTGGTGGTTGTCTCTTGTTTTTGCAGCTTTTCTACTATGAGAGCATATCTCTTGAGGGGTCTTCTGCTTTAGCTCCAACTATTGTACCATATCTGTTTTCTTGGGGAGAGGAGGAGATTGCTGAGAGAGAAAAACGCGAAAAGGAACTTGGAGGCTACGGTTTTGGGAAGGTAACAGGCAAGAAGAAAAGCCATAATTTGAAACTCCCAGAATACACAAATCATATAGATGGCCCACCAATCAACACAGAAAGCACCAGGACTGGGCATGGTCCTCTGCCTGAACCAGAATCAAACCAAAACCAGGTCACAATGCCATTGCCATTCTTTATTGCTTGCCTCTTCGCATGCCACGAGTGCATGTCAAAAGACACTGTTTTATGGGCCTAA 1239 0.4479 MMVNQRIEQHIMSKEKKNKNKNKKKKRKNEVLLPRPACSWVYFSKEFIKEYIASHPESSGLKAATKAASYAWKSMSLEEKEKYTRHAREVWDGYLSSGAAPITKPRKQRLMPEQKEAVKSMGFGSLLGLRCRTLRRSLCLWLLERFDTINCSLEICNEHMPLTPKDVEIVMGLSASGKEVVNSGPEDLISGLRSSYNATNHGISVRLLEERLATAEAGDDFKMSFVLYVLGTLLSPTARLDVSPSFLHFLTNMDLVHQFDWGKFLLDRLVREVSRFRQGKQRAVGGCLLFLQLFYYESISLEGSSALAPTIVPYLFSWGEEEIAEREKREKELGGYGFGKVTGKKKSHNLKLPEYTNHIDGPPINTESTRTGHGPLPEPESNQNQVTMPLPFFIACLFACHECMSKDTVLWA. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07285 412 Pfam HMG (high mobility group) box 34 95 IPR009071 -
Seca7g07285 412 SUPERFAMILY HMG-box 20 95 IPR036910 -
Seca7g07285 412 MobiDBLite consensus disorder prediction 361 382 - -
Seca7g07285 412 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 33 115 IPR009071 -
Seca7g07285 412 MobiDBLite consensus disorder prediction 358 382 - -
Seca7g07285 412 CDD HMG-box_SF 35 94 - -
Seca7g07285 412 MobiDBLite consensus disorder prediction 1 29 - -
Seca7g07285 412 SMART hmgende2 32 119 IPR009071 -
Seca7g07285 412 PANTHER OS07G0283600 PROTEIN-RELATED 40 390 - -
Seca7g07285 412 Gene3D High mobility group box domain 11 97 IPR036910 -
Seca7g07285 412 Pfam Plant mobile domain 162 299 IPR019557 -
Seca7g07285 412 Coils Coil 4 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07285 Seca-Chr7 175729698 175732396 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca7g07285 HMG_box 7.3e-09 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07285 - - gmx:100782920 586.645