Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07277 ATGGACATGCCGAAACACCACGCCTCTAGAACAACGTCTCTGAGGGACGCCTCCGACTCCTCAAAGTTGGAAGGCACCGGTAGCTGGGACGCTCTCGAATGGACCAAGATTGAGCCAATTCCTCGTTACGTCTCGAATGCGAATCTGGATTTCTTGCTCGAGGCGGAACAAGTTGTAGCCGAAGGACATGGTGTTGTTCTTATTAATACAGATGACGCAGGCATGTTGATGGTAACAAATTTTCGTCTTCTTTTCCTGAGTGAGGGAACTAGAAAAGTTATTGCCCTTGGAACAATACCACTTGCAACCATTGAGAAGTTTAACAAGATAGTTGTAAAGGTTCAGTCGAATGCTCGTCAATTAGACAAGACACCAACACAAAGACTGCTCCAGGTGATCGGAAAAGATATGAGAATTATAGTCTTTGGTTTCAGGCCTCGTACAAAACAGAGACGTGTGATATTTGATGCACTACTGAGGTGTACAAAGCAAACGAGATTATGGGATCTTTATGCTTTTGCATCTGGACCTTCTAGGTTTAAGAACACTACTCCACTGGTGCGCTTATTGGATGAGTATTTTCGACTTCTTGGCAAAGGTTCATATCGTGCATCAACCAACATGATTGAAAGTGGGTCCTTCACCTTGTCAAATGATTTATGGAGAATAAGTAGTGTGAATTCCAATTATACAATGTGCCAGAGTTATCCATTTGCTTTGGTTGTTCCAAAGATCATTAGTGATGATGAAGTGCTCCAGGCTTGCAGCTTCCGTGCAAGATGTCGACTGCCTGTAATTTCATGGTGTCATCCTGTTACTGGAGCAGTTCTTGCACGTTCTTCCCAACCTTTAGTTGGTCTCATGATGAATATGAGGAGCAACATGGATGAAAAACTTGTGGCTGCTCTTTGCAGCAAACTTGATGATGGATCACGGAGAAAGCTATATATAGCTGATGCGAGGCCAAGGAAAAATGCATTAGCTAATGGAGCTATGGGAGGTGGTTCAGAATCATCATCGAACTATTTTCAATCTGAGGTAGTCTTTTTTGGGATAGACAACATCCATGCAATGAGAGAGAGCTTTGTTCGGCTCCGAGAATACATGGACACTCATGGCAGAACGTCATCTGATGGAATGTCATCTTTTTTGAGACATGGTGGGTCGACATGGGGTGGTGGCAATTTAAGTAGTATGTCTGCTTCAGTATCAACTCTTGGGGACAGTGGATGGTTATTGCATGTTCAAAGTGTCTTGGCTGGTGCAGCTTGGATTGCTGCCCGTGTTGCTATGGAAAAGGCTTCTGTTCTAGTACATTGCAGTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGTACATTCACAGGGTTTCAGGCACTTGTTGAAAAAGACTGGTTAGCATTTGGTCATCCATTTTCTGATCGTGTAGGAACACCATCTGTCTCTGGAAGTGGCAACACGCCTATTGAGTTATCTAGACAACCTTCAACTGGCAATTTCCCACCATCACCCATGCGGCAGTCATCAGGAACATTCTCATCTCAACCTCCAGCTTCATCTCATGCACATACCTCAAACAACTACTCTCCCATTTTTTTGCAGTGGGTTGATTGTATTTCACAACTGTTGCGGATGTATCCTTTTGCTTTTGAGTTTTCTGCGGCTTTCCTGGTGGACTTCTTAGACTGCATGCTTTCTTGTCGGTTTGGAAACTTCTTCTGTAATAGTGAGAAGGAGAGGCTGCAATTTAACGTTTTTGAAACTTGTGGATGTTTGTGGGTATACTTGGCTGATTTGAGGACATCAGAAGGAGGTTCCCATGTGCATTATAACCCCTTTTATGATCCACTGAAGTACAGCAGTTCTCTTCTGCCCCCAGCAGCAGCGTTAGCCCCAACTTTATGGCCCCAATTCCACCTTCGTTGGGCATGCCCAGAAGAAGCACAGGCTGGGGAGGTTGAAGCACAATGTAGGAAGATAATTATGAAATACGCTGAGATGCAGGAGGCTAAAGAAGTGGCAGAAAGGAAAGTTAAAGAAATTACTAGTGCCATGGAATCACTGAATGCAGAATTGCGACGTGAGAAGCAGCTAAACAGCTCAGCTACGAACATGGCCAAGAGGATAAGCAAAGAAAATATTGCCATAAAGCGTGCAATTCAGTCAATTGGGTGCAAGGTTTACTTCTCTAGTAGTGGTGATTGTATCGTTGACATTGAAACCAACCCAGCAGATGCAACACCAAACTTTTTGTATGGTTCCTCTAGGCAAGAATCAAATAGTGCTGCACTTGGTGACAAAAGGGATCTATCTGTTCCTGTAACAGTTACATCAGCTGATGATGATGGTGATGATGATGATAACAATGCTATTGGTCGAATATGTGAAACTCTATGCCCATTTCGCACTGGAGATGGAGGCTGCAGGTGGCCAAATGGTGGTTGTGCTCAACTAGGTAGCCAGTTTGTTGGTCTGAAGGCAAATTTTGATGCATTTGACCAGCTATCGATTGACGATAGTTATTTCAAGTCTGAGTAA 2571 0.4368 MDMPKHHASRTTSLRDASDSSKLEGTGSWDALEWTKIEPIPRYVSNANLDFLLEAEQVVAEGHGVVLINTDDAGMLMVTNFRLLFLSEGTRKVIALGTIPLATIEKFNKIVVKVQSNARQLDKTPTQRLLQVIGKDMRIIVFGFRPRTKQRRVIFDALLRCTKQTRLWDLYAFASGPSRFKNTTPLVRLLDEYFRLLGKGSYRASTNMIESGSFTLSNDLWRISSVNSNYTMCQSYPFALVVPKIISDDEVLQACSFRARCRLPVISWCHPVTGAVLARSSQPLVGLMMNMRSNMDEKLVAALCSKLDDGSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEVVFFGIDNIHAMRESFVRLREYMDTHGRTSSDGMSSFLRHGGSTWGGGNLSSMSASVSTLGDSGWLLHVQSVLAGAAWIAARVAMEKASVLVHCSDGWDRTSQLVSLANLLLDPYYRTFTGFQALVEKDWLAFGHPFSDRVGTPSVSGSGNTPIELSRQPSTGNFPPSPMRQSSGTFSSQPPASSHAHTSNNYSPIFLQWVDCISQLLRMYPFAFEFSAAFLVDFLDCMLSCRFGNFFCNSEKERLQFNVFETCGCLWVYLADLRTSEGGSHVHYNPFYDPLKYSSSLLPPAAALAPTLWPQFHLRWACPEEAQAGEVEAQCRKIIMKYAEMQEAKEVAERKVKEITSAMESLNAELRREKQLNSSATNMAKRISKENIAIKRAIQSIGCKVYFSSSGDCIVDIETNPADATPNFLYGSSRQESNSAALGDKRDLSVPVTVTSADDDGDDDDNNAIGRICETLCPFRTGDGGCRWPNGGCAQLGSQFVGLKANFDAFDQLSIDDSYFKSE. 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07277 856 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 214 654 IPR029021 -
Seca7g07277 856 PANTHER MYOTUBULARIN-RELATED 36 759 IPR030564 -
Seca7g07277 856 SUPERFAMILY PH domain-like 52 174 - -
Seca7g07277 856 Coils Coil 675 716 - -
Seca7g07277 856 Gene3D - 63 162 IPR011993 -
Seca7g07277 856 ProSitePatterns Tyrosine specific protein phosphatases active site. 438 448 IPR016130 GO:0016311|GO:0016791
Seca7g07277 856 CDD PTP-MTM-like 261 552 - -
Seca7g07277 856 MobiDBLite consensus disorder prediction 489 535 - -
Seca7g07277 856 SMART gram2001c 49 111 IPR004182 -
Seca7g07277 856 ProSiteProfiles Myotubularin phosphatase domain. 198 650 IPR010569 -
Seca7g07277 856 MobiDBLite consensus disorder prediction 1 25 - -
Seca7g07277 856 Pfam Myotubularin-like phosphatase domain 171 591 IPR010569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07277 Seca-Chr7 175669885 175691852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07277 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.765 0.0 1176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07277 K18081 - gmx:100781842 1478.38