Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07258 ATGAAGGAGGAAAAGTCTGAGACATATAGTAATAACATGACAGAAGCAATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGAATGAACTACAACTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGACTCCTGAAGATGTTGATAAGCTTCGTAGAATCGGAGTGAAAACCATATTTTGCCTGCAGCAAGATCCAGATCTAGAATATTTTGGAGTTGATATCAATGCCATACGAGAATATGCCAGGACATGCAATGACATTCAGCACTTGCGTGCTGAGATAAGGGACTTTGATGCATTTGATTTACGGATGCGTCTTCCAGCTGTAGTTAGCAAATTATACAAGGCAATAAATTCTAATGGAGGCGTGACATATATACATTGCACTGCTGGACTTGGAAGGGCTCCAGCTGTTGCGTTGACTTATATGTTTTGGGTTCTGGGTTATAAACTTAATGAGGCTCATACACTACTCCAGAGCAAAAGATCGTGCTTTCCAAAACTCGATGCCATAAAAAGTGCAACTGCTGATATTCTTACAGGCCTCAGTAAGAAGCCTATCACTTTGTCATGGGGAGACAGCAATTGCTCTACAGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGGTGATAATTGAGCCCTCTTGTTTAAATTTAAGCAATGTCTCAGTTCCTCCATTATAG 696 0.4109 MKEEKSETYSNNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRRIGVKTIFCLQQDPDLEYFGVDINAIREYARTCNDIQHLRAEIRDFDAFDLRMRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAVALTYMFWVLGYKLNEAHTLLQSKRSCFPKLDAIKSATADILTGLSKKPITLSWGDSNCSTVEISGLDIGWGQVIIEPSCLNLSNVSVPPL. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07258 231 SMART dsp_5 30 180 IPR020422 GO:0006470|GO:0008138
Seca7g07258 231 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 23 202 - -
Seca7g07258 231 CDD DSP_laforin-like 29 176 IPR045204 GO:0019203
Seca7g07258 231 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 27 172 IPR029021 -
Seca7g07258 231 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 107 165 IPR000387 GO:0016311|GO:0016791
Seca7g07258 231 ProSiteProfiles Dual specificity protein phosphatase domain profile. 30 187 IPR020422 GO:0006470|GO:0008138
Seca7g07258 231 Pfam Dual specificity phosphatase, catalytic domain 73 168 IPR000340 GO:0008138|GO:0016311
Seca7g07258 231 Gene3D Protein tyrosine phosphatase superfamily 19 202 IPR029021 -
Seca7g07258 231 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 2 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07258 Seca-Chr7 175396779 175405831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07258 29 215 Protein tyrosine phosphatase (PTP) family AT3G52180 80.214 7.05e-112 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07258 - - gmx:100786287 414.461