Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07239 ATGAATCTCCCCTTTTCAATGGCCTTGAGGCCTTCATCTTTCATGATCTTGCTGGCATATGGTGCGTTGATAGTTGTTGCCTCATTGACACCATGCTGGTATGTCATAGTCACACATATAGAGAAACATGTGAATTTGAATTCAGAAAATATTGTGTCCCAATTGCAATCACAAATTCAGTACTCAGCTCAACTGTTACACCCAACGGAATCATCATCAACCAATTTAGCAAAATTATTGAGTTCATCCCTTGATTCTACTAATAATATCTCTTTCTCTGATATTGACACCAAGGTGGCTCCGTTATTATTTCAAGCATTTGTGACAATTCCTCACTTAACCCAAATCTCATACATGGGGATGGAAGGTCTTTTTTTCTCATATTACAATGATGATCATGATCAAGTTCTAGCAATGTACTCAAATAAAACCTTATACTATATCCAGCCTGTGAATAGTGAAACTGGAAAGGTTTATGGGGAAGCCATAATATCTAATAACATCTCTATCAATGCAAGTCTTTCAAATGGTTTTGCCTCATTGGGAAGCAATGGCAAAGATCTCTTGTTTCTGAGTTCAGCTAGACTCACAAAAAGTAGAGGAGTGATCTCTCTTGGGTATTCAGCAAAAGCAATAACTGATTTTGTGACCCTTCAAGGCACAAGCTCATCATTGTATTTGGCTACCAAAGATGGAAAAGTAGTTATTGTACAAGGAGGGATTCAACATATAAGGTTGGTCATTTCTAATGATACGGTTTCCTTCCAATCAGTGAATGCAAAGGGCGATCCCATAAGGAATGAGGGCTCTGTCTCATGCAGGGATGATGCCAATTTTGGTTCTACCTTGAAGATTCAGGATACTGAATATTTAATTCACTGCCACCCCATTGATATAATGGGAATTGAATCGGTGTATGTTTTGGCTGTACCACAAAATGGATTAGTCAGCTTTGATCCAAATTATTATAAGAAAAAGGCATTGGCACTTTTGATTGTCATGACAGTCATGATATTTATTGCAATATTTAGCTTTCTATTAATAAATGCAAAAGCCACAAGGCGAGAAATGCATTTGTGTGCCTCACTCATCAAACAGATGGAAGCCACCCAACAATCTGAGCGAAAGAATATGAACAAGAGCCTTGCTTTTGCTAGTGCCAGCCATGATCTTCGTACTTCTCTTGCAGGCCTCACTGGTTTGATTGAATTGTCCTATAAATTAGTTAAGGCAGGTTCAAGATTAGAGACTAATTTAAAACAAATGGAGGATTGTACCCATGACTTACTAGGACTATTGAACTCTATACTTGACACAAGCAAAATTGAGTCAGGGAAAATGCAACTTGAGGAAGAAGAATTTGATGTGTCCTATCTCCTGGAAGGTGTAGTTGATTTCTACCATCCAGAGGCCATGAAGAAAGGTGTAGATCTTGTATTGGACCCTTGTAATGGTTCTGTTATCAAATACTCACGTGTGAAAGGTGACAGGGGAAAGCTTAAACAAGTTTTGTGTAATTTACTGAACAATGCTGTCAAATTTACTAGTGAAGGGAACATAACAGTTCGGGCATGGGCTCAGAAGCCAACATTACAGAGCTCAATAATCAAGACTAACCAATATAGTTTCATGAAATGTTTATCATGCTTACTTTATAAGAAAAATGAAGCACATGATGATCTAGAAAAAGCCATGAATTCAATCCAACAAGACCCAAATTCTATGGATTTTATATTTGAAGTGGATGATACAGGAAAAGGAATTCCCAAAGAGAATTACAAGTCTGTGTTTGAGAATTATGTTCAAGTCAAAGAATCTGCTCTTGGACAAGGAGGAACCGGCTTAGGACTTGGGATTGTGCAGTCTTTGGTGCGTTTGATGCATGGAGATATTGGAATTGTGGACAAGGATATTGGCAAAAAAGGAACATGTTTCAGGTTCAATGTGCTCCTCACATTATGTGAGAGTGAGACAGTGACAGAATGTAGCACAAGGGAATGTCTTGACTATGGATCAGGTGATGACAGGAACCAAACTCAGGGGAGAGTTAATATTCACACTACTAGTTCTGGTTCAAGCATTTGTTCCATGAGTCCAAGGTTACATATTTGCAGCTCTAGTCCTAGACCTGAGGCTTCCCATGTTGTTCTTTTGATTGGAAACAAGGAGAGGAGAAGAACTTCTCAAAGGTTCATGGAAAGCTTAGGGATCAAAGTTAAAGCTGTGAAGTCTTGGAAACATCTCTTTTATACTCTTGAGAAGTTCAGACTGAAGGGTCACTATTCTGGTAGCCACAGTTCTTCAGAGTCTTCCAATATGAGTTCTCATAATTATTCTTTTGCTAAAGCCAGAGGAGTTCCTTTGAGTGCTATGGATGGAAATGGAATTGAGTATATACCACCTTCAGTGTTAAAGAAGACAGATATTGGAGCTGCCCCAGGTTTCATCCTGATTATCATTGATGTAAATGAAGAAACATTTTCTGAACTTCATAGGATTGTATCCAAATTCAAGAAAAGCCTTGCCAACCCTTGTAAGGTTGTTTGGTTGGATAAGTCACTTATGCTTAGTGTAAACTCAGAAACAGTTGATCAAGATGACATAGTCATATCTAAACCTTTTCATGGTAGTCAATTGTTCCAAGTTATAAAGCTTCTTCCTGAGTATGGTGGTACTTGGCAAACAAGTTCTAGTAAAGCTATGAGAGGAATTTCTCATGATAGAGCAAGAAAGAGTAGTAGTAGTAGTAGTAGGGATTCAAACTTATCAAAATACCAGTCCCCTAAGATGATATTGGACAGATCACAAGTATCCCCAAGTGATGAAACCCCATGTGGAGGAGACTCAAGCTGTCACAAACCCTTAAGAGGCAAGAAGTTTTTGGTTGTTGAGGACTCTCAAATTTTAAGAAGGATAGCTTTGGCTAAATTGATTCAACTTGGTGCAATTGTTGAGCAATGTGAGAATGGTAAACAGGCTGTGCAGCTTGTTGACAAGGGTCTAATCAGGGATTATCCTAATCCTCCTTATGATTACATCTTAATGGACTGCAAGATGCCAGAGATGGATGGGTTTGAGGCAACAAGGCGGATACGAGAGATTGAGAAGGCCCACAAAAATGGAGTCCGTATTCCTATCATTGCATTAACTGCTGACGAAATGATGACAGTGACTGCAATGGACTTTCATATAGTAAAGCCCATTGACACAGAGAAATTACTTAGAGCCATCAAATGCATACACACGGAAAGGATTTGA 3258 0.387 MNLPFSMALRPSSFMILLAYGALIVVASLTPCWYVIVTHIEKHVNLNSENIVSQLQSQIQYSAQLLHPTESSSTNLAKLLSSSLDSTNNISFSDIDTKVAPLLFQAFVTIPHLTQISYMGMEGLFFSYYNDDHDQVLAMYSNKTLYYIQPVNSETGKVYGEAIISNNISINASLSNGFASLGSNGKDLLFLSSARLTKSRGVISLGYSAKAITDFVTLQGTSSSLYLATKDGKVVIVQGGIQHIRLVISNDTVSFQSVNAKGDPIRNEGSVSCRDDANFGSTLKIQDTEYLIHCHPIDIMGIESVYVLAVPQNGLVSFDPNYYKKKALALLIVMTVMIFIAIFSFLLINAKATRREMHLCASLIKQMEATQQSERKNMNKSLAFASASHDLRTSLAGLTGLIELSYKLVKAGSRLETNLKQMEDCTHDLLGLLNSILDTSKIESGKMQLEEEEFDVSYLLEGVVDFYHPEAMKKGVDLVLDPCNGSVIKYSRVKGDRGKLKQVLCNLLNNAVKFTSEGNITVRAWAQKPTLQSSIIKTNQYSFMKCLSCLLYKKNEAHDDLEKAMNSIQQDPNSMDFIFEVDDTGKGIPKENYKSVFENYVQVKESALGQGGTGLGLGIVQSLVRLMHGDIGIVDKDIGKKGTCFRFNVLLTLCESETVTECSTRECLDYGSGDDRNQTQGRVNIHTTSSGSSICSMSPRLHICSSSPRPEASHVVLLIGNKERRRTSQRFMESLGIKVKAVKSWKHLFYTLEKFRLKGHYSGSHSSSESSNMSSHNYSFAKARGVPLSAMDGNGIEYIPPSVLKKTDIGAAPGFILIIIDVNEETFSELHRIVSKFKKSLANPCKVVWLDKSLMLSVNSETVDQDDIVISKPFHGSQLFQVIKLLPEYGGTWQTSSSKAMRGISHDRARKSSSSSSRDSNLSKYQSPKMILDRSQVSPSDETPCGGDSSCHKPLRGKKFLVVEDSQILRRIALAKLIQLGAIVEQCENGKQAVQLVDKGLIRDYPNPPYDYILMDCKMPEMDGFEATRRIREIEKAHKNGVRIPIIALTADEMMTVTAMDFHIVKPIDTEKLLRAIKCIHTERI. 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07239 1085 PANTHER TWO-COMPONENT HISTIDINE KINASE 45 1078 - -
Seca7g07239 1085 CDD HisKA 377 441 IPR003661 GO:0000155|GO:0007165
Seca7g07239 1085 Gene3D - 447 657 IPR036890 -
Seca7g07239 1085 SMART HKATPase_4 495 653 IPR003594 -
Seca7g07239 1085 SUPERFAMILY CheY-like 955 1078 IPR011006 -
Seca7g07239 1085 ProSiteProfiles Histidine kinase domain profile. 386 653 IPR005467 -
Seca7g07239 1085 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 447 IPR036097 GO:0000155|GO:0007165
Seca7g07239 1085 Pfam His Kinase A (phospho-acceptor) domain 382 445 IPR003661 GO:0000155|GO:0007165
Seca7g07239 1085 Gene3D - 366 446 - -
Seca7g07239 1085 PRINTS Bacterial sensor protein C-terminal signature 611 629 IPR004358 GO:0016310|GO:0016772
Seca7g07239 1085 PRINTS Bacterial sensor protein C-terminal signature 577 591 IPR004358 GO:0016310|GO:0016772
Seca7g07239 1085 PRINTS Bacterial sensor protein C-terminal signature 595 605 IPR004358 GO:0016310|GO:0016772
Seca7g07239 1085 Pfam Response regulator receiver domain 961 1077 IPR001789 GO:0000160
Seca7g07239 1085 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 434 649 IPR036890 -
Seca7g07239 1085 SMART HisKA_10 379 445 IPR003661 GO:0000155|GO:0007165
Seca7g07239 1085 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 495 651 IPR003594 -
Seca7g07239 1085 CDD REC_hyHK_CKI1_RcsC-like 960 1077 - -
Seca7g07239 1085 MobiDBLite consensus disorder prediction 931 945 - -
Seca7g07239 1085 Gene3D - 947 1083 - -
Seca7g07239 1085 SMART REC_2 958 1077 IPR001789 GO:0000160
Seca7g07239 1085 MobiDBLite consensus disorder prediction 931 950 - -
Seca7g07239 1085 ProSiteProfiles Response regulatory domain profile. 959 1081 IPR001789 GO:0000160
Seca7g07239 1085 MobiDBLite consensus disorder prediction 895 926 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07239 Seca-Chr7 175154176 175160056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07239 7 1051 Histidine Kinase Gene Family AT2G47430 39.602 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca7g07239 HATPase_c 1.2e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07239 - - cam:101504256 1273.84