Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07217 ATGAGGTTGCAAGGTTGTGAGAGTGCTTCAACTCAATGTGAGATTAACGAATTTGCTGAGTGGATTCTTGCATTAGGTGGCGGTGATTTAGGCACTTATGATTTCTTTCAAGATATAGCAATTCTTGCTCCTACATTGGATGTTGTTCATTCCATTAATGAATATGTCATGACAGTATCTGCTGGAGAAGAAATGGTGTACTTGAGTTCTGATACTATATGGAAGATTGGAGTGCATGTTATGCTAATGAGGAATCTTGGTATATCCGCTGGACTTTGCAATGAAACCAGATTAATAGTTGATCATTTAGGTTCTAACATCATTGGAGCAACTGTTATTACAGGAACACATTTGGGAACAAAGGAAAACTGTGCAAAGCTACTTTACCTTAACGAAAAGAAATTTAGCACTAGATTAATAGGAGGTAATAGGGTAATTGGAGCTGGTTTATGGAAAGCTACAGGGACTAATAGGCCTACCTACTCCTCAGAAGGTTCCAAGTGTATTGGCCTGAAGAAATCCCTAGTCTTTTACAAAGGTAGAGCTGCCAAGGGAGTTAAAACTGATTGGATGATGCATGAGTTGAGGCTACCTTCTCTCACAGACTCACTGTCCCCACAGAAGTATATAGAAAACTAG 639 0.3928 MRLQGCESASTQCEINEFAEWILALGGGDLGTYDFFQDIAILAPTLDVVHSINEYVMTVSAGEEMVYLSSDTIWKIGVHVMLMRNLGISAGLCNETRLIVDHLGSNIIGATVITGTHLGTKENCAKLLYLNEKKFSTRLIGGNRVIGAGLWKATGTNRPTYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHELRLPSLTDSLSPQKYIEN. 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07217 212 Gene3D NAC domain 120 210 IPR036093 GO:0003677|GO:0006355
Seca7g07217 212 ProSiteProfiles NAC domain profile. 59 212 IPR003441 GO:0003677|GO:0006355
Seca7g07217 212 Pfam No apical meristem (NAM) protein 142 197 IPR003441 GO:0003677|GO:0006355
Seca7g07217 212 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 142 199 - -
Seca7g07217 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 116 IPR027417 -
Seca7g07217 212 SUPERFAMILY NAC domain 133 199 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07217 Seca-Chr7 174965373 174969473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07217 143 203 NAC Transcription Factor Family AT5G39820 78.689 5.79e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca7g07217 NAM 7.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07217 - - gmx:100170721 127.872