Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07216 ATGGGTCGCGAAACTATTTTCCTTCCAGCTCCACCAACCTCATCCACCACTACTGTGAACCCACCACCAGCACCTGTGGCAGTAGCAGCTCCATCAGCATCAGCGTCAGCAGCAGCAGCAGCTCCACCTACCTCCCTTGCTCCTGGGTTCAGGTTCCACCCAACTGATGAAGAGCTTGTTATTTATTACCTCAAGCGCAAGGTTTGTGGGAAAAGCTTCCGATTTGATGCCATATCTGAGGTTGACATATACAGGAGCGAGCCTTGGGACCTAGCAGATAAGTCAAGGTTGAAGACCAGAGACCAAGAATGGTATTTTTTCAGTGCATTGGACAAAAAATATGGTAATGGTGGCAGAATGAACAGGGCTACGAGCAAAGGGTACTGGAAAGCCACTGGAAATGATCGCCCAGTTAGGCATGAACAAAGGACTGTGGGTTTGAAAAAAACCCTGGTGTTCCATAGTGGTCGTGCTCCAGATGGTAAGAGAACAAATTGGGTCATGCATGAGTACAGGCTTGTTGATGAAGAGCTGGAGAGGGCTGGGACTGGATCCTCTCAGCCTCAGGATGCATATGTCTTGTGTAGAGTATTTCACAAAAATAACATAGGACCTCCAAATGGGCAACGGTATGCACCTTTCGTTGAAGAAGAGTGGGATGATGCATCGGGAATGGTTCCTGGGGCGGAGCCTGTGGATAACGGTTCTGTTGCTCACCGTGCACGTGTCGAAGGCAATGGTGGCGGTTTATGCATTGAAGGGAGAAATGGTGTTGTACAGGACACTCAATCTAACAATAAAGCTCCATTTGATGTGAACAAGCTTCCAATAGAAACTCAAAATCTTCTAGCTGTGTGCAAGAGGGAGAGTATGGCTGAGTACCCACCATCACCAGAAAAGGATGATTGTAAGCATATGCTTATGGATGAGTATCCCTCACCCCAAACGGATAATCCAAAACCCTTCTCTCAAATATACAAAAGGCGACGGCATAACTTGAGCTCCAACAATTCTAATGTTTCTGGAGATTCAATCAGAACCAGCCAGGATCCATGCTCATCCACAATAACCACTGCTGCAACAACACTCCCGACAACCGCCGCCGCCGCCACAACTACCAACACTGCACCGAAAAAACATTTTCTGTCTGCACTGGTGGAGTATTCTCTGATAGAATCTCTTGAATCAAAGGAAAGCCTTCTCTCAGTTCAGCCGCAGGATTTTGATGCAGCTAATCTTGAGTCATCTATGCCTCCAAGCTGTGCCAAGTTCATCAAACACTTGCAGAGTGAGATGCAGAAGCTTAGTGTTGAAAAGGAGACAATGAAGTTTGAGTTGATGAGTGCTCAAGCCATGATCAACATTCTCCAGTCTCGCGTCGACATTCTCAACAAAGAAAATGAGGAACTGAAGCAGATGGCGGAAAATCCTTAG 1434 0.4686 MGRETIFLPAPPTSSTTTVNPPPAPVAVAAPSASASAAAAAPPTSLAPGFRFHPTDEELVIYYLKRKVCGKSFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGNDRPVRHEQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEELERAGTGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWDDASGMVPGAEPVDNGSVAHRARVEGNGGGLCIEGRNGVVQDTQSNNKAPFDVNKLPIETQNLLAVCKRESMAEYPPSPEKDDCKHMLMDEYPSPQTDNPKPFSQIYKRRRHNLSSNNSNVSGDSIRTSQDPCSSTITTAATTLPTTAAAATTTNTAPKKHFLSALVEYSLIESLESKESLLSVQPQDFDAANLESSMPPSCAKFIKHLQSEMQKLSVEKETMKFELMSAQAMINILQSRVDILNKENEELKQMAENP. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07216 477 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 45 345 - -
Seca7g07216 477 MobiDBLite consensus disorder prediction 1 22 - -
Seca7g07216 477 SUPERFAMILY NAC domain 38 201 IPR036093 GO:0003677|GO:0006355
Seca7g07216 477 Pfam No apical meristem (NAM) protein 48 173 IPR003441 GO:0003677|GO:0006355
Seca7g07216 477 MobiDBLite consensus disorder prediction 332 351 - -
Seca7g07216 477 Coils Coil 425 473 - -
Seca7g07216 477 FunFam Nac domain-containing protein 86 55 203 - -
Seca7g07216 477 Gene3D NAC domain 55 203 IPR036093 GO:0003677|GO:0006355
Seca7g07216 477 ProSiteProfiles NAC domain profile. 46 200 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07216 Seca-Chr7 174939937 174948012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07216 1 472 NAC Transcription Factor Family AT3G10480 42.883 3.39e-114 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca7g07216 NAM 5.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07216 - - gmx:100808783 751.51