Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07211 ATGGAAGCACCAGATGAACTCTCTTTGGGGTCCAAAGAGCACACCAACATTGTCAAAGGGAAAAGAACCAAAAGGGTAAGGCCTCAATCTCCAATTCCCTTCTCCATCACTGCTAATTCTTCAACCGGTGAAGGAGAAAGAGAAGATTTTCACAATGGTGATGATGACAACAACAAAGATGATGATAATAATAATAACAATAACAACAGCTCCCCCACCACTTCTTCTGCAGGATTACAAGACAGCACTGAAGAAGAAGAGGATATGGCAAATTGTTTGATCCTTTTGGCTCAAGGACAATCCAGGGAATCCCCTAAACACACTGAGGAAGATGGAGGCATGAACTACACCAAGTATAGCAGTAGAAAATTCTTGGAAGCTGCAGCCTTGGGTTCTGGAAGTGGAAGGGCAGGGTACTATGTGTATGAATGCAAGACATGTAACAGAACATTCCCTTCATTTCAAGCACTTGGAGGACACAGGGCTAGTCACAAGAAGCCTAAGGCCATGGCTGCAATGGCTATTGGTCAAGAGAAAAAGCAACCTTTTTTGTCATCAGATGAGGAAGAGTTTCAATTCAAGACCAATAAATCATCACTTAACCTTCAATTGAATAGCAGGGGAAATTTGTATAGCAATAACAACAAGTCTAAGGTTCATGAGTGCTCTATTTGTGGTGCTGAATTCACATCAGGACAAGCACTTGGTGGACATATGAGGCGCCACAGGGCACCGGTAGGGACTAACACAACACTTTCCTTGACCCCAATGGCCTTGGAACCTGAAGAAGATCAACCCAGAAAAAAAAGGAATGTCTTGTCTTTGGATTTGGATCTCAACCTTCCTGCACCAGAAGATGATCAAAGAGAATCTAAGTTTGCCTTTGCATCCAAGCAACAACAACAACAACAACAACAGCAGCAACAACAGCAGCAGACAAATCTTGTCTTCTCCGCCCCAGCTTTGGTGGATTGTCATTACTGA 984 0.4319 MEAPDELSLGSKEHTNIVKGKRTKRVRPQSPIPFSITANSSTGEGEREDFHNGDDDNNKDDDNNNNNNNSSPTTSSAGLQDSTEEEEDMANCLILLAQGQSRESPKHTEEDGGMNYTKYSSRKFLEAAALGSGSGRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKAMAAMAIGQEKKQPFLSSDEEEFQFKTNKSSLNLQLNSRGNLYSNNNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTNTTLSLTPMALEPEEDQPRKKRNVLSLDLDLNLPAPEDDQRESKFAFASKQQQQQQQQQQQQQQTNLVFSAPALVDCHY. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07211 327 MobiDBLite consensus disorder prediction 44 62 - -
Seca7g07211 327 MobiDBLite consensus disorder prediction 280 312 - -
Seca7g07211 327 PANTHER ZINC FINGER PROTEIN ZAT5 70 304 - -
Seca7g07211 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 242 IPR013087 -
Seca7g07211 327 SMART c2h2final6 220 242 IPR013087 -
Seca7g07211 327 SMART c2h2final6 142 164 IPR013087 -
Seca7g07211 327 MobiDBLite consensus disorder prediction 236 268 - -
Seca7g07211 327 ProSitePatterns Zinc finger C2H2 type domain signature. 222 242 IPR013087 -
Seca7g07211 327 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
Seca7g07211 327 SUPERFAMILY beta-beta-alpha zinc fingers 141 242 IPR036236 -
Seca7g07211 327 MobiDBLite consensus disorder prediction 63 80 - -
Seca7g07211 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 169 IPR013087 -
Seca7g07211 327 Pfam C2H2-type zinc finger 141 167 - -
Seca7g07211 327 Pfam C2H2-type zinc finger 219 245 - -
Seca7g07211 327 MobiDBLite consensus disorder prediction 1 87 - -
Seca7g07211 327 MobiDBLite consensus disorder prediction 294 312 - -
Seca7g07211 327 Gene3D Classic Zinc Finger 140 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07211 Seca-Chr7 174900151 174901164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07211 1 327 C2H2 Transcription Factor Family AT5G04390 47.425 1.14e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g07211 zf-C2H2_6 6.4e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07211 - - gmx:100799383 487.263