Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07184 ATGAACAATAGTAGCAACTCGGAACCGAGCCATGGTGGGAGTGGTGGTTTTGACACTAGTGGGTTCACATATGGCCTAGCATTTATAATTGGCCTTGTCTTCGTAGTTATCACTATAGCTGTTGCTTGTATACGCCTTCGCACTCCCAATATTGTGGCTGGTTTTCCACCTCCTCAACACTCAATTGAGGTCATGGAACAAGGCCACAGTAGTGACACCAGTTTTGAAAGCTACCCCAAGTTGCTATACTCAGAAGTAGTACAGAATAAAGGTGGTTCAACAATTAATAGCTGCTCCATCTGCTTAGGGGACTACAAAGAAAGTGACATGTTGAGGTTACTTCCTGATTGCGGCCACCTCTACCACCTCGCATGTGTTGATCCATGGCTCAGGTTACATTCCACTTGTCTATTTGTTTTCTGCCTAATTATGGTAACCCTTTTGGTAACATTTGCCTCTTATCTTTGCTCTATTCGGCGTCCAATTCCTTCTTCCACTCCATCGCCTGCGCCTGTTGGTGACAATGACATAGACTCCAACAGGACCACAGTCATCAGTGTGGAAGCTGATCAGCCACGCTTAGAACAGAGTGCAACAGTGCGCAATTATCCAAGTCTCCAATTCTCTAGAGGCAACAAATTGTGTAATGGCAGTTCAAGCTGTTCCATATGCTTGATGGATTACAAAGATTCTGACTTGTTGAGAGTGCTGCCTGGTTGTGATCATTTCTTCCATATCAAGTGTGTTGATCCTTGGTTGAGAATGAATTTGACCTGCCCTGTTTGTAGGAGGACACCAAGAATTGGGATGTAA 813 0.4453 MNNSSNSEPSHGGSGGFDTSGFTYGLAFIIGLVFVVITIAVACIRLRTPNIVAGFPPPQHSIEVMEQGHSSDTSFESYPKLLYSEVVQNKGGSTINSCSICLGDYKESDMLRLLPDCGHLYHLACVDPWLRLHSTCLFVFCLIMVTLLVTFASYLCSIRRPIPSSTPSPAPVGDNDIDSNRTTVISVEADQPRLEQSATVRNYPSLQFSRGNKLCNGSSSCSICLMDYKDSDLLRVLPGCDHFFHIKCVDPWLRMNLTCPVCRRTPRIGM. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07184 270 SUPERFAMILY RING/U-box 214 265 - -
Seca7g07184 270 ProSiteProfiles Zinc finger RING-type profile. 98 136 IPR001841 -
Seca7g07184 270 ProSiteProfiles Zinc finger RING-type profile. 221 263 IPR001841 -
Seca7g07184 270 Pfam Ring finger domain 220 263 IPR001841 -
Seca7g07184 270 Pfam RING-like zinc finger 98 126 IPR001841 -
Seca7g07184 270 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 139 266 IPR045899 -
Seca7g07184 270 SMART ring_2 98 139 IPR001841 -
Seca7g07184 270 SMART ring_2 221 262 IPR001841 -
Seca7g07184 270 CDD RING-H2_PA-TM-RING 220 263 - -
Seca7g07184 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 140 IPR013083 -
Seca7g07184 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 267 IPR013083 -
Seca7g07184 270 SUPERFAMILY RING/U-box 78 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07184 Seca-Chr7 174726253 174728968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07184 142 266 C3H Transcription Factor Family AT5G06490 34.965 2.53e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07184 - - vra:106770594 224.172