LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca7g07145	ATGAGTAATGAGGATCCTGGCTTTTCAGGCAGGCAATACAAAGATATAGTGAGTGTTGGAATTAGTGACAGAATTCCCTCTGATAATGAAATCGACAATATATGTTTACAGACGGGTGAAGAATTTTCTGCTGAGTTCTTACGTGATCGGGTTGCTTTAAGGAGATTTCCTGTCATAACCGATGCAGACCAGCGCCTTCCAAACAGATTGGACTTTAATATTAATAATAATAATTACCAGCTGTCCTATGAGGATCTAAAGCATGTTCTTGGGCTAAGGAGAATGGATTCTGATAGTAACTCGGATTTGTTGGAGACTACATTAGCTAGAGGATATGTTGCTGAAGTTGACAACAGGGCTTATCCTAATAATTTGAGCAGACACCAGTTTGAGCATGGCGGTATGAGACAAGCATCTGGTACCTTTTCCAGACAAATATCAGGTAAGTTTTCTGAAGGGTCTTGTTGTGATCCAGTTACTCCAGGTCCAAATTCTCCATCTATTTACGTCGTTGAGTCTCCTCATTCATGCCATCCTTATGGATCAGTCCTCTCAGACGGTTCTTTCTATAAGAAGATAAAGTTTCTGTGTAGTTTTGGAGGTAGAATACTACCAAGGCCAAATGATGGGAAGCTCAGATATGTGGGTGGAGAGACACGGATTATATCGATCAGGAAGAACATTGCATGGGAGGAACTTATGGGGAAGACTTCTGCTATTTGCAATCAAGCTCACATTATCAAATACCAGCTTCCAGGAGAGGATCTTGATGCTCTTATTTCTGTTTGTTCTGATGAGGATCTTCATCATATGATCGAGGAGTATGAAGAGCTTGAAAGAGCTGGAGGTTCTCAACGACTGAGGATTTTTCTCATACCTTCAAATGAATCTGAGAGTCCAAGGTCTAATGAAGCAAGAGTCAATCAGCCAAGTGATGCTGATTATCATTATGTCGTGGCTGTTAATGGTATGCTGGATCTTAGTCCACGAAAGAACCCTAGTGTGCTGAGTTTGGCAAACCATACAAGCCAGTTTGGCAATACCTATGATTACAACAGTCCACATTTCCACAGGGACTCATCCACATCTGCATTTGCTTCAGATTTGAAGGATTGCAACCCAACATCATCTACAAATTTGGCAGGCATGCTTTCAAAACCCGGTCCTCAATTTTTAACAACACTGATGGGTTCAGGGAAGTCATTTAATCAAACGCCTCCTTCATCTCCCATCTGTGTACAGCCTAAAGATACTAAAATTTATAATGTACAGCAATTCACGGATCAACCGTATAATGTTGTTAATGAAAGCATTATTCCCTTTATGGAAAAGGTTCCATGTGACAACGCTTTGTATGTAGACAATACCAATTCTGTTGATCCAATTGAATGTTATAACAATCTTGCTCAAGCACCTCCATTTGAGAATTACCATTCTAGTAATCAATATCCACTGGAGTCTGACCAGGTCAGGAAGCTTAGTGATGATTTTCATTTTCATAGACGAAACAATAGTAAAGATTTTGTCTCTCCTGCAATTTATAGTCAAACTGATATGATATTTGAGAGACCTCTGGTTACCAATGAAGGTTCATATCATTTTAACAAGATTGTCACTCATCCTCATGAGTCATCAAGTTTATTCTTAGTGTCTGATGGTAGAGATGAATCTCAGTACAGAATGTTACATGCACTTTCTGACTCAACACTTCAGGAGAATAATGAAAACTATAAAGCTCGCTTGCAATTTCCCCTTAGTGTAGAGAGAGACAAATTGTCATCACTGGAAACTTCAAGTTCTTTGGAAGAATGTTCAATACAGCCAGGAGAGATAATTAATGGGAAAGAAAATGTGTCTAAGTATCAAAACTTGCCCACTTTTGGAATGACTGATAATTGCAACCAAGTGTTAGAAATTGATAAAGAGAACTTGCACTGTGCAGATAAAAGCACTGATTGGTTTGATGAAAAAGTTAGAGCAATGTCACAAGATAGACATTTACAGTACATCTACTACCCACATGGTGTTTGTTCATCTTCACCAGATTTACAAAGCAGTAAGTGCAACATATCTGCTGCACCATTTATCTCTTTAGAATCCACAAGAAACATGATGGAGCAACCACAAGGTCTGCCATTAGACATGATTGTTTCTGAGTTTTCCACGAGGAGCCCAAATTCATCAATGCATCACCATTATGCTATGTCGGAGACGAAAGACAGTCAACCACTTCGCCCTGGAGCTTTTGAGTTACAACCTGTTGTGTCCCAAACTGACATAGAGCCTGCACCACATATCTCATATACAGACTTGGTTTCTTCTTCATTAAAAGAGGTTGTTATGCCTGATGAGGATCATGCATGCTACCTGCACCGAAAGGAAGAAAACACAATCATCAACAAACAATCATCTGAATACATTGATGAATTTTGTCCCAACAAGCCAGAATCAGTAACTGTAACCAAGGAGCCCATTGATTACATTTCTTCTGGTATCCACTCGTGCTTACATGTTATCTCAAATGTAGATGAAGTTGAACCTACATCTCCTGAAAAGGAAGGGGTAGACTGTATTAATTCAGAATCTGAAAGTAAGCTTGCAAAAGCTGATAGTGGAAACTTCAATAAGCTTACTGGGGATACTTCAACCGCTGAGGCAGAGGTTGAAATTTATGGTTTACAGATTATTGAAAATGGTGATCTTGAAGAACTACAAGAGTTAGGATCTGGAACCTTTGGAACTGTTTATCATGGAAAGTGGAGGGGAACAGATGTTGCAATTAAGAGAATAAAAAGTAGTTGTTTCTCTGGTGGATTGTCAGAGCAAGAGCGGTTGACTAGAGATTTTTGGAGAGAGGCAAAGATTCTGTCAACTCTTCACCATCCAAATGTAGTTGCATTTTATGGGGTAGTTCCAGATGGCCCAGATGGAACATTGGCAACTGTAACAGAATACATGGTGCATGGATCACTGAGGAATGTTCTCTTGAAGAAGGAAAAAGTGCTTGACCGTCGTAAAAGGGTCATGATTGCAATGGATGCAGCCTTTGGCATGGAATATCTACATTTGAAAAATATTGTTCATTTTGATTTGAAGTGTGATAATTTACTTGTCAATCTAGGCGATCCAGAACGGCCTGTATGTAAGGTTGGAGATTTTGGCCTATCAAGAATTAAATGCAACACACTTGTTTCTGGTGGTGTCAGAGGAACCCTCCCATGGATGGCACCGGAATTACTGGATGGTAACAGTTGTAGGGTATCTGAGAAGGTTGATGTTTTCTCATTTGGCATTGCAATGTGGGAAATCTTGACTGGGGAAGAACCGTATGCTAACATGCATTGTGGTGCTATCATAGAAATACCACATGTTAAAACATATCCAACTGATATTAACCCTAACCCTAACCCTCTTCCCCTCCCCCTTTACCCATTGCCATCACCATGGCAGGCTGTTGCTTGCCTTGTTGGAAATGTCACAAATCAAATCTTATTCATGAATATACCAGCTACCATTAACAAGAGGCCTCGATTGCTCTCTTTTATGACTCAAGGAGGTATTGTCAATAATACGCTCAGGCCTCCTATTCCAAAACGGTGTGATTCTGAGTGGAAAAAATTGATGGAAGAGTGTTGGAGTCCTGATCCTGCAGCCAGGCCAACCTTCACACAAGTCAAAAACAGACTTCGCAACATGTCAGCTGTACTGCAGAAAAAGAGACATAATATTGGGAATCAGGAAGTTGCCATTGTGAATTGGAAGCTTGTCGACAGTGCCTTTTGTGCAGCTGCAAAGGGAAGTGGTGAAAGAGGAAAATGA	3819	0.4014	MSNEDPGFSGRQYKDIVSVGISDRIPSDNEIDNICLQTGEEFSAEFLRDRVALRRFPVITDADQRLPNRLDFNINNNNYQLSYEDLKHVLGLRRMDSDSNSDLLETTLARGYVAEVDNRAYPNNLSRHQFEHGGMRQASGTFSRQISGKFSEGSCCDPVTPGPNSPSIYVVESPHSCHPYGSVLSDGSFYKKIKFLCSFGGRILPRPNDGKLRYVGGETRIISIRKNIAWEELMGKTSAICNQAHIIKYQLPGEDLDALISVCSDEDLHHMIEEYEELERAGGSQRLRIFLIPSNESESPRSNEARVNQPSDADYHYVVAVNGMLDLSPRKNPSVLSLANHTSQFGNTYDYNSPHFHRDSSTSAFASDLKDCNPTSSTNLAGMLSKPGPQFLTTLMGSGKSFNQTPPSSPICVQPKDTKIYNVQQFTDQPYNVVNESIIPFMEKVPCDNALYVDNTNSVDPIECYNNLAQAPPFENYHSSNQYPLESDQVRKLSDDFHFHRRNNSKDFVSPAIYSQTDMIFERPLVTNEGSYHFNKIVTHPHESSSLFLVSDGRDESQYRMLHALSDSTLQENNENYKARLQFPLSVERDKLSSLETSSSLEECSIQPGEIINGKENVSKYQNLPTFGMTDNCNQVLEIDKENLHCADKSTDWFDEKVRAMSQDRHLQYIYYPHGVCSSSPDLQSSKCNISAAPFISLESTRNMMEQPQGLPLDMIVSEFSTRSPNSSMHHHYAMSETKDSQPLRPGAFELQPVVSQTDIEPAPHISYTDLVSSSLKEVVMPDEDHACYLHRKEENTIINKQSSEYIDEFCPNKPESVTVTKEPIDYISSGIHSCLHVISNVDEVEPTSPEKEGVDCINSESESKLAKADSGNFNKLTGDTSTAEAEVEIYGLQIIENGDLEELQELGSGTFGTVYHGKWRGTDVAIKRIKSSCFSGGLSEQERLTRDFWREAKILSTLHHPNVVAFYGVVPDGPDGTLATVTEYMVHGSLRNVLLKKEKVLDRRKRVMIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKCNTLVSGGVRGTLPWMAPELLDGNSCRVSEKVDVFSFGIAMWEILTGEEPYANMHCGAIIEIPHVKTYPTDINPNPNPLPLPLYPLPSPWQAVACLVGNVTNQILFMNIPATINKRPRLLSFMTQGGIVNNTLRPPIPKRCDSEWKKLMEECWSPDPAARPTFTQVKNRLRNMSAVLQKKRHNIGNQEVAIVNWKLVDSAFCAAAKGSGERGK.	1273

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca7g07145	1272	SMART	PB1_new	207	294	IPR000270	GO:0005515
	Seca7g07145	1272	SUPERFAMILY	Protein kinase-like (PK-like)	889	1229	IPR011009	-
	Seca7g07145	1272	SMART	serkin_6	901	1235	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca7g07145	1272	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	1026	1038	IPR008271	GO:0004672\|GO:0006468
	Seca7g07145	1272	Gene3D	Transferase(Phosphotransferase) domain 1	989	1256	-	-
	Seca7g07145	1272	Pfam	Protein tyrosine and serine/threonine kinase	903	1118	IPR001245	GO:0004672\|GO:0006468
	Seca7g07145	1272	Pfam	Protein tyrosine and serine/threonine kinase	1188	1229	IPR001245	GO:0004672\|GO:0006468
	Seca7g07145	1272	Gene3D	Phosphorylase Kinase; domain 1	894	988	-	-
	Seca7g07145	1272	Gene3D	-	211	294	-	-
	Seca7g07145	1272	FunFam	Octicosapeptide/phox/Bem1p domain kinase superfamily protein	212	294	-	-
	Seca7g07145	1272	Pfam	PB1 domain	208	292	IPR000270	GO:0005515
	Seca7g07145	1272	ProSitePatterns	Protein kinases ATP-binding region signature.	907	928	IPR017441	GO:0005524
	Seca7g07145	1272	PANTHER	SERINE-THREONINE PROTEIN KINASE	244	1230	-	-
	Seca7g07145	1272	FunFam	Octicosapeptide/phox/Bem1p domain kinase superfamily protein	894	988	-	-
	Seca7g07145	1272	ProSiteProfiles	Protein kinase domain profile.	901	1236	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca7g07145	1272	CDD	PB1_UP2	196	292	-	-
	Seca7g07145	1272	SUPERFAMILY	CAD & PB1 domains	208	300	-	-
	Seca7g07145	1272	CDD	STKc_MAP3K-like	907	1229	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca7g07145	Seca-Chr7	174341151	174353863	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca7g07145	192	338	MAP Kinase Kinase Kinase	AT1G16270	55.705	1.31e-40	161

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-6	Seca7g07145		PK_Tyr_Ser-Thr	1.7e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca7g07145	-		-	gmx:100810711	1667.13