Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07119 ATGAACAACTTCCTATTCCTATTCCTCTTTCTCTTCCTCCTCACTCTCCCCCTCCCTTCCCTCTCCGCAAACGACACCGTTTCTTGTCCTCTCAACTTCACCCTCCTCACTACCCTCAGCGGCGGCGCCAAACCTTCCTTCTTCGACTCCACCGGCAGCACGCGGTGCCAGTTCATCAACCAACCCCTCCGTCTCGTTCAATCCGATTACCTTCTCCGCACCGGCTTCTTCGTCCCTCCTCTCAACTCCTCCGAATCATGCTGGAAAGCCTTCCAATCTTACATCAACATTTTCGACCCTACCTTCGACGTTCGCTCCTCCTGTGGCTTCCAAACCAATTGGATCTCCCAGGGTTGCATCAACGTCACCACCAAGCAACAATTCGAAGCTCTCGTTCCTCAATCAGCGATTCAGAGCATGCAAGCAAATTGTAACCAATCCCTTGGGAATAACTCTCCCTGTGCGCTCTGCACCACAAGCATGTCCAGTTTGCCAGCTTTGGGACAGTCCATTGGGAACCTCTCTGATTGCACGGGTTATCCTTCTATCTATGCCGCTGCTTTTTGCAACCAATTTGGACCTTCTGACCTTGGCACTGCTAAGTGCTTGTTCTCCCTTGGTTTTGACTCTGGGGGTTCCTCTGCTACCAAAAGAAAAGTTGTTATTATTGTTGTTGTTTCTGTTGTTTGTGTCTTGGCTTTGTCCGTTGTTGTTGGGTTTTGGGCTTATTGGAAATTGAATGAAAAGATGATGGGGGATAAGGATGTTAATATTGCTGAGGCTGGTTTGGTTTCTAGGTTGGATTCCATGGACCAGAGTACTACTTTGATTAGGTTCACTATTGATGATATTAAGAAGGCTACTAAGAATTTCTCTAGGGATAATATAATTGGGAAAGGGGGTTATGGGAATGTGTATAAAGGGTTGCTGCCTGATGGGAGTGAAGTTGCATTTAAGAGGTTTAAGAATTGTTCAGTTGCTGGGGATGCTAGTTTCACTCATGAGGTTGAGGTTATAGCCAGTGTTAGGCATGTTAACCTTGTTGCTTTGAGGGGTTATTGTTCTGCAACCACTCGTTTAGAAGGTTACCAGAGGATTATTGTTTGTGATTTGATGAACAATGGGAGCCTTCATGATCATTTGTTTGGTTCTACAGGGGTGAAACTTAGTTGGCCAATTCGGCAGAGGATTGCTCTGGGCACAGCTAGGGGGTTGGCTTATTTGCATTATGGGGCTCAACCTGCAATCATCCATAGGGATATTAAGGCGAGTAATATACTTCTGGATGAGAAGTTTGAAGCTAAGGTAGCAGATTTTGGACTAGCAAAGTTTAACCCTGAGGGAATGACACATATGAGCACAAGGGTAGCTGGAACAATGGGGTATGTTGCTCCTGAGTATGCTTTGTATGGGCAATTGACAGAGAGAAGTGATGTGTTTAGTTTTGGTGTTGTGCTTCTTGAGCTTTTGAGTGGGAGGAAGGCTCTTCAAATGAACAATGATGGCCAACCTTCTGCTTTGACTGATTGGGCTTGGTCATTAGTTAGGACAGGTAAAGCATTGGATGTTATTGAAGATGGCATGCCAGAACCTGGTTCATCTGAAGTGCTTGAGAAGTATGTGTTGATTGCTGTGCTTTGTTCTCATCCACAGTTGTATGCTAGGCCAACAATGGATCAGGTTGTTAAAATGATGGAGACTGATGATGAATTAGTGCCCTCAATACCGGAACGGCCAATCCCTCTTGTTGCTGGGAAGCTTGATATTGAGAGATCTGTGAGCAGTAGTGGCTCCGGTCAGCTCTCTAGTCCAACCGGTTATCAAGCATATACATTAGGAAGTGAACACCATTCTTCTAATTCTAGGGAAGAAAGAAGCTCAGGCTCCAGGATTTTGAGTACAGATTGA 1908 0.4555 MNNFLFLFLFLFLLTLPLPSLSANDTVSCPLNFTLLTTLSGGAKPSFFDSTGSTRCQFINQPLRLVQSDYLLRTGFFVPPLNSSESCWKAFQSYINIFDPTFDVRSSCGFQTNWISQGCINVTTKQQFEALVPQSAIQSMQANCNQSLGNNSPCALCTTSMSSLPALGQSIGNLSDCTGYPSIYAAAFCNQFGPSDLGTAKCLFSLGFDSGGSSATKRKVVIIVVVSVVCVLALSVVVGFWAYWKLNEKMMGDKDVNIAEAGLVSRLDSMDQSTTLIRFTIDDIKKATKNFSRDNIIGKGGYGNVYKGLLPDGSEVAFKRFKNCSVAGDASFTHEVEVIASVRHVNLVALRGYCSATTRLEGYQRIIVCDLMNNGSLHDHLFGSTGVKLSWPIRQRIALGTARGLAYLHYGAQPAIIHRDIKASNILLDEKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQMNNDGQPSALTDWAWSLVRTGKALDVIEDGMPEPGSSEVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETDDELVPSIPERPIPLVAGKLDIERSVSSSGSGQLSSPTGYQAYTLGSEHHSSNSREERSSGSRILSTD. 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07119 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Seca7g07119 635 MobiDBLite consensus disorder prediction 593 635 - -
Seca7g07119 635 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Seca7g07119 635 SMART serkin_6 291 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07119 635 Gene3D Transferase(Phosphotransferase) domain 1 372 572 - -
Seca7g07119 635 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 143 627 - -
Seca7g07119 635 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 372 574 - -
Seca7g07119 635 Pfam Protein kinase domain 292 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07119 635 ProSiteProfiles Protein kinase domain profile. 291 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g07119 635 SUPERFAMILY Protein kinase-like (PK-like) 273 580 IPR011009 -
Seca7g07119 635 MobiDBLite consensus disorder prediction 593 616 - -
Seca7g07119 635 Gene3D Phosphorylase Kinase; domain 1 258 370 - -
Seca7g07119 635 Pfam SPARK 25 168 IPR043891 -
Seca7g07119 635 CDD STKc_IRAK 297 566 - -
Seca7g07119 635 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 253 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07119 Seca-Chr7 174085124 174087031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07119 20 621 Receptor kinase-like Gene Family AT2G48010 63.861 0.0 784
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Seca7g07119 Pkinase 2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07119 - - gmx:100800760 947.192