Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07105 ATGCTTCCAAAGAGTGTTTCCGAAGATGAAGTCTCTGCTCTTTTCTCCAAGTATGGAACAATAAAGGATTTACAGATTTTGAGAAGTCCCCAGCAAACAAGTAAAGGATGTGCATTTTTGAAGTACGAAACCAAAGAACAGGCCCTTGCTGCTCTCGAGGAAATCAATGGAAAGCATAAAATGGAGAGTTCAAGTGTTCCTTTGGTTGTCAAATGGGCGGATACTGAAAAAGAAAGACAAGCTCGAAGGGCTCAGAAAGCACAATCCCAAACCAATGTGCCACATGATGATTCTCAACACGCCTCATTATTTGGAGCCTTGCCAATGGGTTATGTTCCCCCCTATAATGGATATGGTTATCAGGCTCCTGGGGGTTATGGTCTCATGCCGTACCGTTATCCACCAATGCAGAATCAACCGGGTTTCCATAATATGATGCCTCACATGAACCAAGGAAATACATTGCGGCCTGATCTTGGTCGCAATATGAATCCTAGAAATTATCCTGTGCCTCCTATAAGTTACGTTGGCTCTTATTCTGCTGTGCCAGGTTTACAGCATCCAATGGCATACCCTGGAGGAATGATTAGTCCAAGGCCTGTGAGTAATTCTCCAGGTTCTGTTTCACCTGCAGGTGGGAATTACAACTCTGCTACATATTCAGGCGCCAGTAAAAATTCTGGTGGTCAGGTTGAAGGACCACTTGGTGCCAATCTATTTATTTATCACATACCTCAAGAATATGGAGATCAAGAACTTGCAACTGCATTTCAACCGTTTGGTAGAGTTTTGAGTGCAAAAATTTTTGTTGATAAAGCAACTGGTGTGAGCAAATGTTTTGGATTTGTTAGTTATGATACTCCAGAAGCTGCTCAAGCTGCCATTAGTATGATGAATGGTCGCCAATTAGGTGGTAAGAAATTAAAGGTTCAGCTCAAGAGGGACAATAACAAACAGAGTAAGCCTTGCTGA 972 0.4249 MLPKSVSEDEVSALFSKYGTIKDLQILRSPQQTSKGCAFLKYETKEQALAALEEINGKHKMESSSVPLVVKWADTEKERQARRAQKAQSQTNVPHDDSQHASLFGALPMGYVPPYNGYGYQAPGGYGLMPYRYPPMQNQPGFHNMMPHMNQGNTLRPDLGRNMNPRNYPVPPISYVGSYSAVPGLQHPMAYPGGMISPRPVSNSPGSVSPAGGNYNSATYSGASKNSGGQVEGPLGANLFIYHIPQEYGDQELATAFQPFGRVLSAKIFVDKATGVSKCFGFVSYDTPEAAQAAISMMNGRQLGGKKLKVQLKRDNNKQSKPC. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07105 323 FunFam RNA-binding protein BRN1 204 314 - -
Seca7g07105 323 CDD RRM3_CELF1-6 239 311 - -
Seca7g07105 323 PANTHER RNA BINDING PROTEIN 1 316 - -
Seca7g07105 323 Gene3D - 215 322 IPR012677 -
Seca7g07105 323 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 315 IPR000504 GO:0003723
Seca7g07105 323 SUPERFAMILY RNA-binding domain, RBD 2 318 IPR035979 GO:0003676
Seca7g07105 323 Gene3D - 1 84 IPR012677 -
Seca7g07105 323 SMART rrm1_1 238 311 IPR000504 GO:0003723
Seca7g07105 323 SMART rrm1_1 2 71 IPR000504 GO:0003723
Seca7g07105 323 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 59 IPR000504 GO:0003723
Seca7g07105 323 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 309 IPR000504 GO:0003723
Seca7g07105 323 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 75 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07105 Seca-Chr7 173899093 173903386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07105 2 94 Eukaryotic Initiation Factors Gene Family AT1G22760 33.333 1.42e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07105 K13207 - gmx:100813239 551.592