Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07089 ATGAGTGGTTCTCCAAATCCAAAACACCAAGATGCTGAAGCTCCACAAGTACACAGAACATGTGACAATTGTGGGGACTCTACGCCTCTTTTGTACTGCAAAGCTGATTCTGCCAAGCTCTGTTTCTCTTGTGATCGTGTTGTTCATTCCACCAACCAGCTTTTCTCCAAGCACACTCGCTCTCAGCTCTGTGATGCTTGTGGTGATGCCCCTGCCACAATCCTCTGTTGTGATGAAAACTCTGTTCTTTGCCAGAACTGTGACTGGGAAAGCACCAACAACGACCTCTCCGTGCATCAAAGGAGGCCCCTTGAGGGATTCTCCGGGTGCCCTTCTGTGACTCAACTCTTAACAATTGTGGGTCTCAGCGAAAAAACTCTTCTTTCAAATGAGGGAAGTTCTGAGATTGAAGAAGGACTCTCCGATTTGGTTGTGTGGGAATCTCGTTCTGTTTTTGGTCTTGACGATTTGATTGCTTCAACTGATTCTTCACATAATTATCATGCTATGCCGGTTCCTCCTCTTCATAAGAAACATAAAGCTGCTTGCGGGAGACAGAAAGAAGAAATTGTTAGGCAGCTCCGTGAATTAGCAAAGTCAGAGCCCGGCTTGATTTATGGAAATGCAGATGCTGAACAACACATGCAATCAGGAAACTTGTCTACTAGTTATGAACGTGACATAGAGGCTCATATATTTCCTTCATGTGAGGCTGGGACAGGTGTTTTTTGGTGGCAAAGAGAAAGCAGTGATCCTGCAAATCAAGTAGTTCCTTCTGATACGTCCCTCAGAACTTATAGCGAGCAAATTCCAGCTAATGATAGAATTGTCTCTGAGAATCATGCCAATGATAATGACGAAGGGAAACCATCAAATTCTTTTAACGCTGAAACCTTGTCTACTACTCCTAGAGCTACTCCATATGAGTTAACAAGTCAAGAAAGAGATTCAGCATTATTACGGTACAAAGAGAAGAAGAAAACAAGAAGATATGACAAGCACATTAGATATGAATCAAGAAAAGTTCGGGCAGAAAGCAGGATAAGAGTTAAGGGTAGGTTTGCCAAAGATGAAACACTATAA 1083 0.4284 MSGSPNPKHQDAEAPQVHRTCDNCGDSTPLLYCKADSAKLCFSCDRVVHSTNQLFSKHTRSQLCDACGDAPATILCCDENSVLCQNCDWESTNNDLSVHQRRPLEGFSGCPSVTQLLTIVGLSEKTLLSNEGSSEIEEGLSDLVVWESRSVFGLDDLIASTDSSHNYHAMPVPPLHKKHKAACGRQKEEIVRQLRELAKSEPGLIYGNADAEQHMQSGNLSTSYERDIEAHIFPSCEAGTGVFWWQRESSDPANQVVPSDTSLRTYSEQIPANDRIVSENHANDNDEGKPSNSFNAETLSTTPRATPYELTSQERDSALLRYKEKKKTRRYDKHIRYESRKVRAESRIRVKGRFAKDETL. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07089 360 CDD Bbox1_BBX-like 21 63 - -
Seca7g07089 360 ProSiteProfiles CCT domain profile. 315 357 IPR010402 GO:0005515
Seca7g07089 360 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
Seca7g07089 360 MobiDBLite consensus disorder prediction 252 278 - -
Seca7g07089 360 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 20 356 - -
Seca7g07089 360 MobiDBLite consensus disorder prediction 287 313 - -
Seca7g07089 360 MobiDBLite consensus disorder prediction 252 323 - -
Seca7g07089 360 CDD Bbox1_BBX-like 63 104 - -
Seca7g07089 360 ProSiteProfiles Zinc finger B-box type profile. 59 104 IPR000315 GO:0008270
Seca7g07089 360 Pfam CCT motif 315 357 IPR010402 GO:0005515
Seca7g07089 360 SMART bboxneu5 64 104 IPR000315 GO:0008270
Seca7g07089 360 SMART bboxneu5 16 63 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07089 Seca-Chr7 173704825 173707945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07089 13 330 C2C2-CO-like Transcription Factor Family AT2G47890 41.667 2.42e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca7g07089 CCT 1.1e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07089 - - gmx:100798117 451.44