Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07081 ATGTCAAATGTTTCAGGTGATGAAGTTAGTTTCTCCTCAGCAAACACTGTGGAAGAAGTTCATCAAGAAAAGGAGCAACAACAACCACAAAACCACCCTCATGGCTCAAGTTCAGGACCTTCTGGTGTTTCTAACAGCAATAGCTCCTCTAATCAACAACAACAAGAAGCAACCAAGAAGAAAAGAAGCCTACCTGGAACCCCAGGCAAATATTCAACCCTGTCTTTCAGTTTTAATCCAAATGCTGAAGTTATTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTCTGTGAGATCTGCAATAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCATGGAAACTGAGGCAGAGAACAACCAATGAGGTGAAGAAAAGGGTGTATGTGTGTCCTGAACCATCATGCGTTCACCATAACCCTGCTCGTGCATTAGGAGACCTCACTGGCATTAAAAAACATTACAGCAGAAAACATGGTGAGAAGAAATGGAAATGTGATAAATGCTCTAAAAAATATGCAGTCCAATCTGATTGGAAGGCTCACCAGAAAACATGTGGTACCAAAGAATACAAATGTGATTGCGGAACCATATTTTCCAGGAGAGATAGTTTTATCACTCACAGAGCATTTTGTGACGCATTGACTGAAGAAAACAACAGAGTGAACCAGGGATTAACAAGTGGCATGGCATCAAACATGCAAAATGAAATACAGCTGGATCCTATGGCTACAATGCCTCTAAGCACTAGTTCCAACACTGTATCTGAATTCAACAACTACGATCCTAAGAACCCTCTTAAAACCCTCTCCCAAGAACTTCTCCCAATTCCATTCAAGTCCATGAGTATGGTTGGGGGCAGCATGTTCTCCACTTCATCAGGTACACTTTTTGGTGGTCCAAGAAGCTTATCTCCCTCTTCTTCCAGCCTTCAACTCAGTTCCAACAACAACAACAACTCCCCTGGTTTCAATTACTTCCAAGACAACAAAAATGGAGGCCTAATTTCTGGCTCAGCTCAAATGTCTGCAACAGCTTTATTACAGAAGGCAGCCCAAATGGGTGCCACTGCAAGCAATAGCATGAACTCTCCCATGATGCAAAAAAGCTTTGTTTGTGGCATGGTTGGTCCTGACACTGTCTCTTCTCCTAGAACACCATATTCTGGTGCTATCCAGCAGCATAACTCTTCCTTTGACCATTTCCATCCTCACACTGATCAATGTCACATGGCTGGTGTTAGTGGTGGTGGAGCTTTCACCAACCAATTTTTTCAGAGAGGGCAACAAGAAATGCCATTAATATTTGATTCTAACACAGCTGGTTCAACAATGAGTGAAATGGGAATGTTCAGCCCAATGTTCATGGGAAGTGACAACAATCCTGGCTTGATGAAGAATGTGGAACAGGAAGTAGCAGAAGGAAACCCAATGAGGCCATCAAGGTTTGGAGGTAGTGACACTGACATGACCACAGTTCATGACTTTTTGGGTGTTGGGGGTTCAACTTCAAGAGAAACGAGTTTGCATGAACCACAAAAACAACAACAGCAAAGGTTCGAGTTTGAAGCATCTCACCAGAGGTTGCCAAACTTTCACCACCACCTTCAGTTATGGAGAAACCAATTCGAGACATTTGAGAGCTGCCACAGACCATGA 1689 0.4298 MSNVSGDEVSFSSANTVEEVHQEKEQQQPQNHPHGSSSGPSGVSNSNSSSNQQQQEATKKKRSLPGTPGKYSTLSFSFNPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTNEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTKEYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMASNMQNEIQLDPMATMPLSTSSNTVSEFNNYDPKNPLKTLSQELLPIPFKSMSMVGGSMFSTSSGTLFGGPRSLSPSSSSLQLSSNNNNNSPGFNYFQDNKNGGLISGSAQMSATALLQKAAQMGATASNSMNSPMMQKSFVCGMVGPDTVSSPRTPYSGAIQQHNSSFDHFHPHTDQCHMAGVSGGGAFTNQFFQRGQQEMPLIFDSNTAGSTMSEMGMFSPMFMGSDNNPGLMKNVEQEVAEGNPMRPSRFGGSDTDMTTVHDFLGVGGSTSRETSLHEPQKQQQQRFEFEASHQRLPNFHHHLQLWRNQFETFESCHRP. 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07081 562 FunFam protein indeterminate-domain 5, chloroplastic-like 152 231 - -
Seca7g07081 562 SMART c2h2final6 174 194 IPR013087 -
Seca7g07081 562 SMART c2h2final6 139 169 IPR013087 -
Seca7g07081 562 SMART c2h2final6 98 120 IPR013087 -
Seca7g07081 562 MobiDBLite consensus disorder prediction 1 17 - -
Seca7g07081 562 Gene3D Classic Zinc Finger 153 232 - -
Seca7g07081 562 Pfam Zinc finger, C2H2 type 98 120 IPR013087 -
Seca7g07081 562 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 37 530 IPR031140 -
Seca7g07081 562 Gene3D Classic Zinc Finger 77 143 - -
Seca7g07081 562 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 120 IPR013087 -
Seca7g07081 562 MobiDBLite consensus disorder prediction 29 61 - -
Seca7g07081 562 MobiDBLite consensus disorder prediction 1 68 - -
Seca7g07081 562 MobiDBLite consensus disorder prediction 308 336 - -
Seca7g07081 562 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Seca7g07081 562 FunFam protein indeterminate-domain 12-like 77 145 - -
Seca7g07081 562 SUPERFAMILY beta-beta-alpha zinc fingers 97 195 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07081 Seca-Chr7 173548498 173551254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07081 38 369 IDZ Gene Family AT3G50700 52.825 2.59e-109 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g07081 zf-C2H2 0.0058 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07081 - - gmx:100779705 695.656