Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07079 ATGGGTGATAACATATTGGGGAAATCCTCAGACAGAGAAGGCTTTATTAAGTACAACAATTTCACAACTACTGCAAGTTCAAGTGACAGTACTCATCATCATCAACAAGATGGGGGTCTCATTAGAGAACAAGATCGGTTGCTTCCAATTGCTAATGTGGGGAGGATTATGAAGCAAATCCTCCCTCCTAATGCAAAAATCTCCAAAGAAGCTAAAGAAACGATGCAAGAGTGTGTCTCTGAGTTTGTTAGCTTTGTGACTGGGGAAGCTTCTGATAAGTGCCACAAGGAGAAGAGGAAGACTGTGAATGGAGATGATATTTGCTGGGCCTTGGCTACCTTAGGGTTTGATGACTACGCTGAGCCACTCAAAAGGTATTTGCATCGCTATAGGGAATTGGATGGGGAAAGAGCCAATCAAAGTAAGGCCAATGAAGAAAACAATATTGAAACTTATAACTATGAAGGTAAGCTACCATCTTCTTCTTCTTCTACCCCAATAGTGATGTTTAATGTCACTGATAGGAGCAGCAGTGGCCCTCAGTCCAGGGGATTTTGA 558 0.4211 MGDNILGKSSDREGFIKYNNFTTTASSSDSTHHHQQDGGLIREQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHRYRELDGERANQSKANEENNIETYNYEGKLPSSSSSTPIVMFNVTDRSSSGPQSRGF. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07079 185 MobiDBLite consensus disorder prediction 144 185 - -
Seca7g07079 185 FunFam Nuclear transcription factor Y subunit B-3 35 158 - -
Seca7g07079 185 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 151 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca7g07079 185 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Seca7g07079 185 PRINTS CCAAT-binding transcription factor subunit A signature 113 131 - -
Seca7g07079 185 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Seca7g07079 185 MobiDBLite consensus disorder prediction 135 185 - -
Seca7g07079 185 Gene3D Histone, subunit A 35 160 IPR009072 GO:0046982
Seca7g07079 185 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 47 111 IPR003958 -
Seca7g07079 185 SUPERFAMILY Histone-fold 44 150 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07079 Seca-Chr7 173514195 173514752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07079 17 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 68.148 5.45e-66 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca7g07079 CBFD_NFYB_HMF 2.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07079 K08065 - vvi:104879763 230.72