Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07028 ATGGATTCAGAAGCTCAAGCAAGGTATGCCTTTAATGGCAAGGTCATGCTTGCCTCTACCATCTTCCTCTTCCTCATAATACTCCTTATCACTTTCCTTCACACCTACTGCCGCTCCTGCTTCCGCAGCCGCCGCCGACACGGCCACCGCCACCGCCACCGTATTCTAGCTAATAATTCCACCGCCACTTTTAACGATAGCCTTCACCCTTCCGTTCTCAACTTCCTACCCACCTTCACTTGCTCCTCAGACACCCACCGCCCGCACCACGACTGCGCCGTGTGCTTGTCGGAGTTCGCCGACGGCGACGAAGGCCGTATCCTTCCGAACTGTAACCACGCTTTCCACTCCCATTGTATCGATGCATGGTTCCGTTCCCACTCCAACTGTCCACTTTGCCGAACCCCGGTTCACCAGCGTGCAGCACCGGTCCAACCGGTTCAATTGGCGTCCTCTAGCATCGAACCGGGTCCGGTGGGTTTGTCTTTGTCGTATTTTCCCGCACCGATTGGGTGCCCGAGGAAGTCATTGGAGCTGGTAGGCATAATAGTGGAGATGGAAAACGCAAAGAGACTCGGATCCGGGTCACATGGCCCGCATATTGCGGGTTCAGAGGGTCGGATAATATGA 630 0.5524 MDSEAQARYAFNGKVMLASTIFLFLIILLITFLHTYCRSCFRSRRRHGHRHRHRILANNSTATFNDSLHPSVLNFLPTFTCSSDTHRPHHDCAVCLSEFADGDEGRILPNCNHAFHSHCIDAWFRSHSNCPLCRTPVHQRAAPVQPVQLASSSIEPGPVGLSLSYFPAPIGCPRKSLELVGIIVEMENAKRLGSGSHGPHIAGSEGRII. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07028 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 143 IPR013083 -
Seca7g07028 209 SUPERFAMILY RING/U-box 76 140 - -
Seca7g07028 209 SMART ring_2 92 133 IPR001841 -
Seca7g07028 209 CDD RING-H2_EL5-like 91 134 - -
Seca7g07028 209 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 142 - -
Seca7g07028 209 Pfam Ring finger domain 91 134 IPR001841 -
Seca7g07028 209 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07028 Seca-Chr7 172988831 172989460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07028 9 142 Rapid Response to Elicitors AT3G16720 44.521 7.41e-33 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07028 - - gmx:102669188 228.794