Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07023 ATGAACTTAGTGGACTCTTACATTCAAGGTAGCTCCTCTTTGTCTCAATCCACACTTCGCGCTCTTCAAGACTGCAAATTCCTTGCTGAACTGAGTTTTGAGTACTTATCAAACACTTATGCCACAACCAATCAAGCTAGTGATGTTCTTCCCACTTCTCAAGCTGACGATTTTGAAACCATTCTCAGTGCCGTTTTGACTAACCAACACACTTGTTTAGATGGTTTACAGACCACAGCTTCTGATGCAAGATTGAAGAACGACCTCTCCTCATCGCTCTCTGATGACACAAAACTTCACAGTGTCACCCTGGCCCTGTTCCTAAAGGGTTGGGTACCTGAGAAGAAAATCAAAACCTCATGGCAACAAAACGGCAGGCATTTGAATTTCAAAAATGGTCGTTTACCGTTGAAGATGTCAAATCGTGCACGTTCTATCTATGACTCCGCTAGACGCCATGGGAGGAAACTGCTTCAAACAGCCACTGACGGTGAAAGCGTTGTGGTAAGTGACATTATGGTTGTTAGTAAAGATGGAAGCGGAAACTTCACCACTATCAATGATGCAATAGCTGCTGCACCAAACAATAGCGTTGCTAGTAATGGCTACTTCATGATAATTATCACTGAAGGAGTGTATCAAGAATATGTATCCATAGACAAAAGCAAGAAGTACTTGATGCTTGTTGGAGAAGGAATCAATCGGACAATTATCACTGGCAATCACAATGTGGTTGATGGTTTCACAACATTCAACTCAGCAACATTTGCTGTGGTCGGTCAAGGGTTTGTAGCAGTGAACATAACATTCCGCAACACTGCTGGACCAAGCAAGCACCAAGCAGTTGCACTCAGAAGTGGAGCAGATATGTCCACCTTCTACAGCTGCAGCTTTGAAGGATATCAAGACACATTGTATACACATTCCATGAGGCAGTTTTATAGAGAATGTGATATCTATGGCACTGTGGACTTCATATTTGGAAATGCTGCTGTTGTTTTGCAAAACTGCAACATCTATCCCCGCCTTCCCCTCAGTGGACAATTCAATACCATCACAGCTCAAGGTCGAACGGATCCAAGTCAAAACACAGGCACTTCCATACAGAATGCTACTATTAAAGCAGCTGATGATTTGGCTCCAAAAGTTGGTACAGTGCAAACGTACCTTGGGAGACCATGGAAACAATATTCAAGGACAGTTGTGATGCAATCCTTCATGGATAGTTTTATAAATCCAGCTGGTTGGCATGAATGGAGTGGTGATTTTGCACTGAGCACATTATACTATGCAGAATACGCTAACACAGGACCTGGTTCAGATACTACTAATCGAGTGACGTGGCCCGGTTATCATGTTATCAATGCTACTGATGCAGCCAATTTTACGGTGTCTAACTTCTTGAGCGGGGATGAGTGGCTTCCCCAAACTGAGATGTCAGATCGTGCACGTTCTATCTATGACTCCGCTAGACGCCATGGGAGGAAACTGCTTCAAACAGCCACTGACGGTGAAAGCGTTGTGGTAAGTGACATTATGGTTGTTAGTAAAGATGGAAGCGGAAACTTCACCACTATCAATGATGCAATAGCTGCTGCACCAAACAATAGCGTTGCTAGTAATGGTTACTTTATGATAATTATCACTGAAGGTGTGTATCAAGAGTATGTTTCCATAGATAAAAGCAAGAAGTACTTGATGCTTGTTGGAGAAGGAATCAATCGGACAATTATCACCGGCAATCACAATGTCGTTGATGGTTTCACAACATTCAACTCAGCAACATTTGCTGTAGTCGCTCAAGGGTTCGTAGCAGTGAACATAACATTCCGCAACACTGCTGGACCAAGCAAAGGCCAAGCAGTTGCACTGAGAAGTGGATCAGATATGTCCACCTTCTATAGCTGCAGCTTTGAAGGGTATCAAGACACATTGTATACACATTCCATGAGGCAGTTTTATAGAGAATGTGATATCTATGGTACTGTGGACTTTATATTTGGTAATGCTGCTGTTGTTTTGCAAAACTGTAACATCTATCCTCGCCTCCCACAGAGTGGACAATTCAATGCCATCACAGCTCAAGGTCGAACTGACCCAAATCAAAACACAGGCACTTCCATACAAAATGCTACAATTAAAGCAGCTGCTGATTTGGCTCCAAATGTTGGTACAGTGCAAACCTATCTTGGGAGACCATGGAAACAATATTCAAGGACAGTTGTGATGCAGTCCTTCATGGATAGTTTTATAAACCCTGCTGGTTGGCATGAATGGAGTGGTGATTTTGCATTGAGTACATTATACTATGCAGAATACGCTAACACTGGACCCGGTTCAGATACTTCTAATCGAGTGACGTGGCCTGGTTATCATGTTATCAACGCTACTGATGCTGTCAATTTTACGGTGTCTAACTTCTTGAGCGGGGATGATTGCCTTCCTCAAACTGGTGTCCCATACTCGAGTGGTTTGATATAG 2481 0.4297 MNLVDSYIQGSSSLSQSTLRALQDCKFLAELSFEYLSNTYATTNQASDVLPTSQADDFETILSAVLTNQHTCLDGLQTTASDARLKNDLSSSLSDDTKLHSVTLALFLKGWVPEKKIKTSWQQNGRHLNFKNGRLPLKMSNRARSIYDSARRHGRKLLQTATDGESVVVSDIMVVSKDGSGNFTTINDAIAAAPNNSVASNGYFMIIITEGVYQEYVSIDKSKKYLMLVGEGINRTIITGNHNVVDGFTTFNSATFAVVGQGFVAVNITFRNTAGPSKHQAVALRSGADMSTFYSCSFEGYQDTLYTHSMRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLSGQFNTITAQGRTDPSQNTGTSIQNATIKAADDLAPKVGTVQTYLGRPWKQYSRTVVMQSFMDSFINPAGWHEWSGDFALSTLYYAEYANTGPGSDTTNRVTWPGYHVINATDAANFTVSNFLSGDEWLPQTEMSDRARSIYDSARRHGRKLLQTATDGESVVVSDIMVVSKDGSGNFTTINDAIAAAPNNSVASNGYFMIIITEGVYQEYVSIDKSKKYLMLVGEGINRTIITGNHNVVDGFTTFNSATFAVVAQGFVAVNITFRNTAGPSKGQAVALRSGSDMSTFYSCSFEGYQDTLYTHSMRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPQSGQFNAITAQGRTDPNQNTGTSIQNATIKAAADLAPNVGTVQTYLGRPWKQYSRTVVMQSFMDSFINPAGWHEWSGDFALSTLYYAEYANTGPGSDTSNRVTWPGYHVINATDAVNFTVSNFLSGDDCLPQTGVPYSSGLI. 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07023 826 CDD PMEI-like_3 6 111 - -
Seca7g07023 826 SUPERFAMILY Pectin lyase-like 168 477 IPR011050 -
Seca7g07023 826 ProSitePatterns Pectinesterase signature 2. 319 328 IPR033131 -
Seca7g07023 826 SMART complete 548 728 IPR006633 -
Seca7g07023 826 SMART complete 208 388 IPR006633 -
Seca7g07023 826 Pfam Pectinesterase 173 471 IPR000070 GO:0030599|GO:0042545
Seca7g07023 826 Pfam Pectinesterase 513 811 IPR000070 GO:0030599|GO:0042545
Seca7g07023 826 Pfam Plant invertase/pectin methylesterase inhibitor 4 106 IPR006501 GO:0004857
Seca7g07023 826 FunFam Pectinesterase 166 484 - -
Seca7g07023 826 SUPERFAMILY Pectin lyase-like 508 824 IPR011050 -
Seca7g07023 826 FunFam Pectinesterase 506 825 - -
Seca7g07023 826 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 6 107 IPR035513 -
Seca7g07023 826 ProSitePatterns Pectinesterase signature 2. 659 668 IPR033131 -
Seca7g07023 826 PANTHER PECTINESTERASE 9 477 - -
Seca7g07023 826 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 109 IPR035513 -
Seca7g07023 826 Gene3D - 171 485 IPR012334 -
Seca7g07023 826 Gene3D - 511 826 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07023 Seca-Chr7 172948430 172953331 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07023 478 826 Carbohydrate Esterase AT2G47550 69.341 5.35e-174 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07023 K01051 - gmx:100786124 781.556