Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07021 ATGTCTAATCATGCACGTTCTATTTATGACTCCGCTAGACGCCATGGTAGAAAACTACTTCAAACTGTCACCGACAATGAAAGCGTTGTTGTAAGTGACATTGTGGTTGTTAGTCAAGATGGAAGCGGAAATTTCACCACTATCAATGATGCAATAGCTGCTGCACCAAACAATAGCGTTGCTAGTAATGGCTACTTCATGATATTTATCACCCAAGGTGTGTATCAAGAGTATGTTTCCATTGACAAAAGCAAGAAATACTTGATGCTTGTTGGAGAAGGAATCAATAGGACAATCATCACTGGCAATCACAATGTCGTTGATGGTTTCACAACATTCAACTCAGCAACATTTGCTGTGGTCGGTCAAGGGTTTGTAGCAACTAACATAACATTCCGCAACACTGCTGGACCAAGCAAGATGCAAGCGGTTGCACTAAGAAGTGGAGCCGATATGTCTACCTTTTACAGCTGCAGCTTTGAAGGATATCAAGACACATTGTATACACATTCCATGAGGCAGTTTTATAGAGAATGTGATATTTATGGCACGGTGGACTTCATATTTGGAAATGCTGCTGTTGTTTTGCAAAACTGCAACATCTATCCCCGCCTTCCCCTCAGTGGACAATTCAATACCATCACAGCTCAAGGTCGAACGGATCCAAGTCAAAACACAGGCACTTCCATACAGAATGCTACTATTAAAGCAGCTGATGATTTGGCTCCAAATGTTGGTACCGTGCAAACGTATCTTGGGAGACCATGGAAACAATATTCAAGGACAGTTGTGATGCAATCCTTCATGGATAGTTTTATAAACCCTGCTGGTTGGCATGAATGGAGTGGTGATTTTGCATTGAGCACATTATACTATGCAGAATACGCTAACACGGGACCTGGTTCAGACACTACGAATCGAGTGACGTGGCCTGGTTATCATGTTATCAATGCTACGGATGCAGCCAATTTTACGGTGTCTAACTTGTTGAGCGGAGATAATTGGCTTCCTCAAACTGAGATGTCAAATCGTGCACGTTCTATCTATGACTCCGCTAGACGCCATGGGAGGAAACTGCTTCAAACAGCCACTGACGGTGAAAGCGTTGTGGTAAGTGACATTATGGTTGTTAGTAAAGATGGAAGCGGAAACTTCACCACTATCAATGATGCAATAGCTGCTGCACCAAACAATAGCGTTGCTAGTAATGGCTACTTCATGATAATTATCACTGAAGGAGTGTATCAAGAATATGTATCCATAGACAAAAGCAAGAAGTACTTGATGCTTGTTGGAGAAGGAATCAATCGGACAATTATCACTGGCAATCACAATGTGGTTGATGGTTTCACAACATTCAACTCAGCAACATTTGCTGTGGTCGGTCAAGGGTTTGTAGCAGTGAACATAACATTCCGCAACACTGCTGGACCAAGCAAGCACCAAGCAGTTGCACTCAGAAGTGGAGCAGATATGTCCACCTTCTACAGCTGCAGCTTTGAAGGATATCAAGACACATTGTATACACATTCCATGAGGCAGTTTTATAGAGAATGTGATATCTATGGCACTGTGGACTTCATATTTGGAAATGCTGCTGTTGTTTTGCAAAACTGCAACATCTATCCCCGCCTTCCCCTCAGTGGACAATTCAATACCATCACAGCTCAAGGTCGAACGGATCCAAGTCAAAACACAGGCACTTCCATACAGAATGCTACTATTAAAGCAGCTGATGATTTGGCTCCAAAAGTTGGTACAGTGCAAACGTACCTTGGGAGACCATGGAAACAATATTCAAGGACAGTTGTGATGCAATCCTTCATGGATAGTTTTATAAATCCAGCTGGTTGGCATGAATGGAGTGGTGATTTTGCACTGAGCACATTATACTATGCAGAATACGCTAACACAGGACCTGGTTCAGATACTACTAATCGAGTGACGTGGCCCGGTTATCATGTTATCAATGCTACTGATGCAGCCAATTTTACGGTGTCTAACTTCTTGAGCGGGGATGAGTGGCTTCCCCAAACTGGTGTTCCATTTTTGAGTGGATTGATATAG 2067 0.4272 MSNHARSIYDSARRHGRKLLQTVTDNESVVVSDIVVVSQDGSGNFTTINDAIAAAPNNSVASNGYFMIFITQGVYQEYVSIDKSKKYLMLVGEGINRTIITGNHNVVDGFTTFNSATFAVVGQGFVATNITFRNTAGPSKMQAVALRSGADMSTFYSCSFEGYQDTLYTHSMRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLSGQFNTITAQGRTDPSQNTGTSIQNATIKAADDLAPNVGTVQTYLGRPWKQYSRTVVMQSFMDSFINPAGWHEWSGDFALSTLYYAEYANTGPGSDTTNRVTWPGYHVINATDAANFTVSNLLSGDNWLPQTEMSNRARSIYDSARRHGRKLLQTATDGESVVVSDIMVVSKDGSGNFTTINDAIAAAPNNSVASNGYFMIIITEGVYQEYVSIDKSKKYLMLVGEGINRTIITGNHNVVDGFTTFNSATFAVVGQGFVAVNITFRNTAGPSKHQAVALRSGADMSTFYSCSFEGYQDTLYTHSMRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLSGQFNTITAQGRTDPSQNTGTSIQNATIKAADDLAPKVGTVQTYLGRPWKQYSRTVVMQSFMDSFINPAGWHEWSGDFALSTLYYAEYANTGPGSDTTNRVTWPGYHVINATDAANFTVSNFLSGDEWLPQTGVPFLSGLI. 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07021 688 ProSitePatterns Pectinesterase signature 2. 521 530 IPR033131 -
Seca7g07021 688 SMART complete 410 590 IPR006633 -
Seca7g07021 688 SMART complete 70 250 IPR006633 -
Seca7g07021 688 Gene3D - 373 688 IPR012334 -
Seca7g07021 688 SUPERFAMILY Pectin lyase-like 370 686 IPR011050 -
Seca7g07021 688 FunFam Pectinesterase 28 347 - -
Seca7g07021 688 Gene3D - 29 346 IPR012334 -
Seca7g07021 688 PANTHER PECTINESTERASE 357 677 - -
Seca7g07021 688 FunFam Pectinesterase 368 687 - -
Seca7g07021 688 Pfam Pectinesterase 35 333 IPR000070 GO:0030599|GO:0042545
Seca7g07021 688 Pfam Pectinesterase 375 673 IPR000070 GO:0030599|GO:0042545
Seca7g07021 688 SUPERFAMILY Pectin lyase-like 30 339 IPR011050 -
Seca7g07021 688 ProSitePatterns Pectinesterase signature 2. 181 190 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07021 Seca-Chr7 172920932 172930678 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07021 340 688 Carbohydrate Esterase AT2G47550 70.201 5.76e-178 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07021 K01051 - gmx:100786124 619.387