Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07010 ATGTGTGGCGGTGCTATCATCGCTGATTTCATTCCTCATCGTGGAGGTCGCCGTCTCACGGCCTCTGAGCTTTGGCCCAATTCATTCGGTAAGAAGAATGATTCAGACTTCGATTATTCTCATGTGCCTCATCAACAACCATCCACTCTCAAAAGATCTCAACCTTGCACAGTTGAGAAGCCGGTGAAAAGGCAGAGGAAAAACCTCTACAGAGGGATTCGCCAGCGTCCTTGGGGTAAATGGGCTGCAGAGATTCGCGATCCTAGAAAAGGGGTTCGTGTTTGGCTTGGTACCTTCAACACTGCTGAAGAAGCTGCTAGGGCCTATGATCAAGAGGCTCGAAAAATCCGTGGTGAGAAAGCCAAGGTGAATTTCCCAAACGAAGACGATCAATATTCTATTCAAGCTCGTCGTAGAAATCCACCCCTTCCAGTTCGACCCCCAAACCCTCCTCCCCTGTATCAACAACAATATCGTTGCGATCTCAATAATGCTCCTAAAAACCTGAACTTGGAGTTTGGTTATGATCTGAACCAAGCTGGATCATTTGCTTCCCATCTGGGCACTGTTAACTCTGACTCTGTTATTGTATCTGGTGATGAAAATTCTGAATATGGGTCAGGTCCAGGTCCAGGTTCAGGTTCAGAGGGTGCTGATCACTCAACAACAGAGTTCATGGGCTCTAATCAGCATGTAAACGGTTATTTTGGTGGTATGATGAAAACGAATGAGAAAGAAGCAGAGCAAGAGCAAAAAACAGAGGTGATTGAAGCTGAAGCTGCTAAGAGCGAAGTGCAGGAGCTATCAGAAGAGCTGATGGCATATGAGAATTACATGAAGTTTTATCAGATTCCTTACTATGATGGGCAATCTGTGGCGCAGAATAATGTTCAGGAAAGTGTGGTTGGGGATCTATGGAGCTTCGATTGA 930 0.4581 MCGGAIIADFIPHRGGRRLTASELWPNSFGKKNDSDFDYSHVPHQQPSTLKRSQPCTVEKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDQEARKIRGEKAKVNFPNEDDQYSIQARRRNPPLPVRPPNPPPLYQQQYRCDLNNAPKNLNLEFGYDLNQAGSFASHLGTVNSDSVIVSGDENSEYGSGPGPGSGSEGADHSTTEFMGSNQHVNGYFGGMMKTNEKEAEQEQKTEVIEAEAAKSEVQELSEELMAYENYMKFYQIPYYDGQSVAQNNVQESVVGDLWSFD. 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07010 309 Gene3D AP2/ERF domain 69 127 IPR036955 GO:0003700|GO:0006355
Seca7g07010 309 ProSiteProfiles AP2/ERF domain profile. 69 126 IPR001471 GO:0003700|GO:0006355
Seca7g07010 309 PANTHER DNA-BINDING DOMAIN 52 270 IPR044808 GO:0003700|GO:0009873
Seca7g07010 309 MobiDBLite consensus disorder prediction 197 221 - -
Seca7g07010 309 Coils Coil 251 278 - -
Seca7g07010 309 SUPERFAMILY DNA-binding domain 69 127 IPR016177 GO:0003677
Seca7g07010 309 MobiDBLite consensus disorder prediction 124 151 - -
Seca7g07010 309 SMART rav1_2 69 132 IPR001471 GO:0003700|GO:0006355
Seca7g07010 309 CDD AP2 70 127 IPR001471 GO:0003700|GO:0006355
Seca7g07010 309 FunFam Ethylene-responsive transcription factor 2 68 127 - -
Seca7g07010 309 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Seca7g07010 309 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Seca7g07010 309 Pfam AP2 domain 70 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07010 Seca-Chr7 172827811 172829689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07010 1 127 AP2-EREBP Transcription Factor Family AT3G16770 54.348 5.43e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g07010 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07010 K09286 - gmx:100780763 438.728