Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g07008 ATGAAGGAGGCCAAGAGGAAGGGACGTCACTCTGGATATGGTAAGCGTAAGGGTACAAGAGAGGCAAGGCTCCCCACCAAAATTCTTTGGATGAGGAGGATGCGTGTGCTCAGACGTTTGCTTCGCAAGTACAGGGAATCAAAAAAGATTGACAAGCACATGTACCATGATATGTACATGAAGGTGAAGGGTAATGTTTTCAAGAACAAGAGAGTCCTGATGGAGAGTATACACAAGTCCAAGGCTGAGAAGGCAAGAGAGAAGACTTTATCTGACCAGTTTGAGGCCAAGCGTGCAAAGAACAAGGCAAGCAGGGAAAGGAAAATTGCTCGGAGAGAAGAGCGCTTGGCTCAAGGTCCTGGTGAGAAGCCATCTGCTGCCCCTACTGCACCATCTGCCACAGCATCCCAGCCAGCTCAAGCACCAAAGAAATCCAAGAAGTAA 444 0.4842 MKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKPSAAPTAPSATASQPAQAPKKSKK. 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g07008 147 SMART Ribosomal_L19e_2 1 81 IPR000196 GO:0003735|GO:0005840|GO:0006412
Seca7g07008 147 Pfam Ribosomal protein L19e 2 80 IPR000196 GO:0003735|GO:0005840|GO:0006412
Seca7g07008 147 MobiDBLite consensus disorder prediction 1 20 - -
Seca7g07008 147 MobiDBLite consensus disorder prediction 129 147 - -
Seca7g07008 147 MobiDBLite consensus disorder prediction 79 147 - -
Seca7g07008 147 SUPERFAMILY Ribosomal protein L19 (L19e) 2 79 IPR035970 GO:0003735|GO:0005840|GO:0006412
Seca7g07008 147 MobiDBLite consensus disorder prediction 79 119 - -
Seca7g07008 147 FunFam Ribosomal protein L19 1 127 - -
Seca7g07008 147 Gene3D - 1 123 - -
Seca7g07008 147 PANTHER 60S RIBOSOMAL PROTEIN L19 1 123 IPR039547 GO:0003723|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g07008 Seca-Chr7 172801474 172803590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g07008 1 147 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 82.313 9.85e-82 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g07008 K02885 - gmx:100527501 260.766