Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06993 ATGGGAAAAGCAACTGCTAAGAAGAAATCCCCCTCCACCGCTGTCCACCCTCCTTACTTCGAGATGATCTCAGATGCGATATCCACGTTGAAAGAGCGCACTGGTTCGAGCCAGCAAGCAATAGCGAAATTCATCGAGGACAAACACAACAAAGTGCTTCCTCCCAACTTCAGGAAACTCCTCTCGGTCCAGTTGAAGAACTTTGTGAAATCTCAGAGGCTTTATAAGGTCAAAAACTCGTACAAGATCTCCTCCACGGGCACCAACAAGCCAACTTCGCCAAACAAGCACGAGGATGACAAGAAGGTAGCAGAGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGAGCCTGAGTCAGGTGAAGACACCCGAAACACTCAAGACCAAGGCCACAACTACCAACAGCAAGAAGAAGAAGGATGGAACTAAGAAGAAATCTGTGGCATCCTCAGGGTCAGGGGGGAAAGTGAAGCGTCTGAGTCAGGTGAAGACTCCTGAAGCAATGAAGAAGAAGCCCAACTTGGCCCCTATGAAGCGCAAGACTACTACTCCCAAACCCATCAGTTCTTCCAGGCCCACCAGGAAAGCTAGGAAATGA 597 0.4858 MGKATAKKKSPSTAVHPPYFEMISDAISTLKERTGSSQQAIAKFIEDKHNKVLPPNFRKLLSVQLKNFVKSQRLYKVKNSYKISSTGTNKPTSPNKHEDDKKVAEKKKKKKKKTKSLSQVKTPETLKTKATTTNSKKKKDGTKKKSVASSGSGGKVKRLSQVKTPEAMKKKPNLAPMKRKTTTPKPISSSRPTRKARK. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06993 198 PRINTS Histone H5 signature 29 46 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca7g06993 198 PRINTS Histone H5 signature 100 114 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca7g06993 198 PRINTS Histone H5 signature 2 23 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca7g06993 198 PRINTS Histone H5 signature 162 181 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca7g06993 198 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 15 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca7g06993 198 Gene3D - 8 118 IPR036388 -
Seca7g06993 198 CDD H15 13 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca7g06993 198 MobiDBLite consensus disorder prediction 79 198 - -
Seca7g06993 198 PANTHER HISTONE H1 5 185 - -
Seca7g06993 198 Pfam linker histone H1 and H5 family 16 79 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca7g06993 198 SMART h15plus2 13 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca7g06993 198 SUPERFAMILY "Winged helix" DNA-binding domain 14 94 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06993 Seca-Chr7 172602031 172602989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06993 17 83 Single Myb Histone (SMH) Gene Family AT1G72740 40.299 1.35e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06993 K11275 - gmx:100306187 180.259