Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06979 ATGGGAAGAGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAAGGGGAGGTGGACAGCAGAGGAGGATGAGATCTTAGCCAAATACATTCAGGCCAATGGGGAAGGTTCATGGAGGTCATTGCCCAAGAATGCAGGATTATTAAGGTGTGGAAAGAGTTGCAGACTAAGATGGATTAACTATTTAAGAGCTGACCTCAAAAGAGGGAACATTTCTGTTGAAGAGGAAGATACCATTGTAAAGCTACACGCTTCTTTTGGCAACAGGTGGTCATTGATAGCAAGTCACTTGCCAGGAAGAACGGACAACGAAATAAAGAACTACTGGAATTCTCACCTCAGCAGAAAAATTTACCGTTTCCAGAGGGTATCTAATTCAGAGACAGGTGTTATGGATATTCCTCCTCCCCAGCGAAGAGGTGGTAGAACGAGCCGTTGGGCCATGAAGAAGAACAAAACCTATGCGGCCCAAAAGGAAAAACAGATCAGGCCCAAACAAACCGTCGTCAGTACTCAACAACAGATGAATAGTGAAGCAGCAACAGCAGTTCCAGTTCCACCCACGCCGTCACTAGAAAGCGAGGGTTTGTCTAACACTGTCTCGGATTTCATGTTGTTGGAAGGAGAGGGAGTAAATAAAGTAGATGAGCCAAGAAAAGAGGAGGAGTTAGAGGTGAAAAGAACGCATGAGAAAACGTGTGTTGACGGTGAGAAAGAAACCGGTGAAGACGACATCTTAGGACTGTTCTATGAAGTGGAAGGAGGCAGCATTAATGACGACGGTGGGGCGTTGTGTTTTAGTGACATGATGATGATGGAGAGTTGCTTGGTAGAAGAAGCATGTGGGGTTTCGGAATTAAGTGAAGAGAGAGAAGAAGGTAATGACGTGGTGGGGGTTGGTGAGGAAAATGAAAGAACGGAGAGAAAGAATAATATTACTAACAATTACAAAATGGCATCATCGAGTGAGGACCCGGAGAGTAGTGTGAACCTAAGCTCAAATGGGGAAAGTGGAGAATGGTACTGTAGCCCTAATTGGAATTGGGAGAGTGTCATGGAGTTTGATCATGATCTAAACATTATTGATGATCATGGTTGCGAGTACAAAGAAAATCTGCTTACTTGGTTGTGGGAAGATGATGATTGGGAAAGCGATGGCAACAAATTGGGAGAGATAGATCCTCAAAGACAAAATGATATGATTGCTTGGTTTCTCTCTTGA 1218 0.4409 MGRAPCCEKVGLKKGRWTAEEDEILAKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISVEEEDTIVKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYRFQRVSNSETGVMDIPPPQRRGGRTSRWAMKKNKTYAAQKEKQIRPKQTVVSTQQQMNSEAATAVPVPPTPSLESEGLSNTVSDFMLLEGEGVNKVDEPRKEEELEVKRTHEKTCVDGEKETGEDDILGLFYEVEGGSINDDGGALCFSDMMMMESCLVEEACGVSELSEEREEGNDVVGVGEENERTERKNNITNNYKMASSSEDPESSVNLSSNGESGEWYCSPNWNWESVMEFDHDLNIIDDHGCEYKENLLTWLWEDDDWESDGNKLGEIDPQRQNDMIAWFLS. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06979 405 Gene3D - 11 67 - -
Seca7g06979 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca7g06979 405 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca7g06979 405 CDD SANT 16 61 IPR001005 -
Seca7g06979 405 FunFam Myb transcription factor 11 67 - -
Seca7g06979 405 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca7g06979 405 MobiDBLite consensus disorder prediction 285 311 - -
Seca7g06979 405 FunFam Myb transcription factor 71 116 - -
Seca7g06979 405 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca7g06979 405 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca7g06979 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca7g06979 405 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 208 - -
Seca7g06979 405 MobiDBLite consensus disorder prediction 174 194 - -
Seca7g06979 405 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca7g06979 405 SMART sant 66 114 IPR001005 -
Seca7g06979 405 SMART sant 13 63 IPR001005 -
Seca7g06979 405 CDD SANT 71 112 IPR001005 -
Seca7g06979 405 Gene3D - 71 116 - -
Seca7g06979 405 MobiDBLite consensus disorder prediction 285 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06979 Seca-Chr7 172467494 172471412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06979 1 148 MYB Transcription Factor Family AT2G47460 72.956 1.37e-75 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g06979 Myb_DNA-binding 3.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06979 K09422 - gmx:100814275 416.387