Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06974 ATGATAACAGAAGAGGCTAAGGATTCTGAGGAAGAGGCTGAAGATTCCAAGGTGGGGCAATCAGGAGGAAGAAATATAAGCAGAAGTCCCCTTAGTTCAAAATTTGGTATAGCTGCAACTCATGGATTGTCAAATTCAGTAAGTGAAGCATCAAGCATCAAACACGCTTCACCTATACCAGGAAATAAGAACAGATCTGATCAAGACTTACGTTTGCATAGTGTTGATGATATGAAGATGAGCTGTCAAACTCCTGATGTTTCACGGCGTTCTACATCATGTCAGCTACCTGATGCATGTGTTAAGACCAGTGAGTCCAAGAATGCTGGTTTTCCAAGCTGTCAGGATCTTGGCCTTACTGGAAATGCAAACTCATCTGGTCAGCAACATGATCTGCATGATCACACTTCTGAGTCTAAGAAGTTGGTAAGTGACAAGAGATCAACTTCTGCAAGTGCTGAGGGACTTGCACATTCAGATGAAAAACTTAGTGCTATGAGTTATTCTAGGAAGAACCAAAAGGGATTTACTCTTCCAAGGGTCTTGGATGACTGCTCAGGTATAGAAAGCAACAACCGTGAAACTTCTTCCACTAAGTTAAAGGCAAGTGAGGGAATCAAATCTACCTGTATTGAAGGTTCTAGGAAAGGAAATGATTTTATTGAAGGGGATGAGCCAATTAGTTTATTGCCTCAAAAGAGAGTAAATGAAGCTGCTTCTACTAAATTAAAAAAATCAAAGAAGATGTCTGCTGATGCAAAGTTGTCTATTGAAAGAACTCCAGCAGCAAAAGGTAAATCTCAAGGATTAAAAGTGACATCTGTGGTTGATGAGCCACCTGAGTCTGACGGCTATTTTTCTGTTGGCAAAGATGGTTTAAATAAGTCAAACCCTTGCTTAATTTCTAAATCTGCAGCTTCTACCTCCAACTTACTGGCTTTTGACGAGCCTATCTCAAAAAAGGCAAGCTCAGAGTCTGCTCAATGTGATAACACCTATCAGAATTCGGCACATGTGGCTATTCAAGGCTTAAATGAGTCTAAAGTTAATGGTGGGCCTGATATTACAGGTTTTGGACTGGGACAAGATGATAATGAAGCAGGGCAGCTTAATGTCACTAAAAATCTCGAGTGTAGATCATCACCAGAAAACAAGAAGCCACTGAATGAGGAATCCGCTGGTCGTTTGGATTTAAGCAATGAAGACAGTAATAAGCTGATTAGGAAATCACCTCGCAAGAAGTCATTTGCCAAGAGAAGTTTGGGTTCTAGACCCAAAACAGGTGTCACTGCTAAACTGAAAAGTTCAGTTTCCTTGAATAAAACTACCCCTCAAAGTGAAGGTGTAAGTTCTTCCAGTGGAAGCAAAGAGATAGCAACTTGTGATGCCAAGAAGCATCAGGCGTCCCCTCAAAACCTTGGTGTTAATAAATTAATGGAGCAAGAAACAGTTAGTAAATATGAAGAAGTTGCTGGTGGGAGAACTGAATTTTTGGATGACGAAACAGAGGCTCCTGATGAAAAATGTGAATATGAGTTGGGAATGGCTGTTGATGAAGAATTGGTTCATCTATCAAAAAAAGCAGACCCAGCAACAGAAATGAAGTCAGAAGCAATTCACCAAGTACAAAAAAGTGAAGAAGCAATGCCTCCTAAAAGAGGCACTGATGAAGCTGAAAAACAGAAGCCACCTTCACGGGAAGACTCAACCTCAAAGTTTAGAGTAAAGCATCCAGCGAAGAAGCGTCCTGCAACTACAGCCAAGAAGACCACAATTTCAAAGAAGAAATCTGAAGAGGCAGTGTCTAGGGACAAGATTCCTAATGAGACGAGATATGAGGCAGAAATAGAAATCCAGGAAGAAATGTCTGTACCTGCTGATATAAGTGACAACTCAACTATACCAAGAAATAAGGCAGAGACATTTATTGAAGAGGAGAAGGAGAATATACCAATTGATGGAGAGCAGGATATAGTGGAAGACAGAAATGTTGGAAATCCAACTAATAAATCTAGTGTAAGGCCAGGAAAAATCAACTCCAAGAAAACGGGGCTCCATCCTTCTACATCAGAATCTAACGCAAGAGTAAAAACTGAAGCCACATGTTTTATATTAAGTGGGCATCGCCTACAGAGAAAGGAGTTTCAACAAGTAATCAAGCGTTTGAAAGGAAGGGTTTGCCGGGACTCTCATCAGTGGTCATATCAGGCGACACACTACATAGCTCCAGACCCTATACGCAGGACAGAGAAATTTTTTGCAGCTACTGCATCAGGAAGGTGGATTCTTAAAACTGATTTCTTAACTGCCAGTAGCCAGGCAGGAAAATTCATGCCAGAGGAGCCTTATGAGTGGCACAAGAATGGTCTCAGTGAGGATGGTGCAATCAATATGGAGGCTCCGAGAAAGTGGCGGCTGTTGAAAGAAAGAACAGGTCATGGTGCCTTATATGGGATGCGCATTGTTGTATATGGCGATTGTATTGCCCCGCCTTTGGATACTTTGAAGCGTGTAGTCAAAGCTGGAGATGGAACAATATTAGCAACATCTCCTCCTTATACCCGCTTCCTTGGTACTGGGATCGATTATGCCATAGTTAGCCCTGGAATGCCACGTGTTGATTTGTGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGTGTTGTAGCGGACTATTTGGTCGAGTATGTCTGCAAGCCCGGCTTCTCCCTTGAGAGACATGTTTTATATGGCACTCATACTTGGGCAGAGAGGTCATTTGCAAAACTTCAAAGTAGAGCAGAAGAGATTATTGAGGAGCTCATTGCTCCTGAGGATGGCAATGATAATGATATAACTTGCCAAGTATGTGGATCCCGGGATAGAGGAGATGTAATGCTGATTTGTGGTGATGAAAGTGGTTCTGTGGGCTGTGGAATCGGTACCCATATCGATTGCTGTGATCCTCCACTCACAGATGTTCCTGAGGAGGATTGGTTTTGCCCAAAATGCTCTAGCACCAAAAACTGCTCGAACAATCCCAGGAAAAAGAAAAAGGGTGCATTGTCTTTATCTAAGGGTAAGTGA 3066 0.4194 MITEEAKDSEEEAEDSKVGQSGGRNISRSPLSSKFGIAATHGLSNSVSEASSIKHASPIPGNKNRSDQDLRLHSVDDMKMSCQTPDVSRRSTSCQLPDACVKTSESKNAGFPSCQDLGLTGNANSSGQQHDLHDHTSESKKLVSDKRSTSASAEGLAHSDEKLSAMSYSRKNQKGFTLPRVLDDCSGIESNNRETSSTKLKASEGIKSTCIEGSRKGNDFIEGDEPISLLPQKRVNEAASTKLKKSKKMSADAKLSIERTPAAKGKSQGLKVTSVVDEPPESDGYFSVGKDGLNKSNPCLISKSAASTSNLLAFDEPISKKASSESAQCDNTYQNSAHVAIQGLNESKVNGGPDITGFGLGQDDNEAGQLNVTKNLECRSSPENKKPLNEESAGRLDLSNEDSNKLIRKSPRKKSFAKRSLGSRPKTGVTAKLKSSVSLNKTTPQSEGVSSSSGSKEIATCDAKKHQASPQNLGVNKLMEQETVSKYEEVAGGRTEFLDDETEAPDEKCEYELGMAVDEELVHLSKKADPATEMKSEAIHQVQKSEEAMPPKRGTDEAEKQKPPSREDSTSKFRVKHPAKKRPATTAKKTTISKKKSEEAVSRDKIPNETRYEAEIEIQEEMSVPADISDNSTIPRNKAETFIEEEKENIPIDGEQDIVEDRNVGNPTNKSSVRPGKINSKKTGLHPSTSESNARVKTEATCFILSGHRLQRKEFQQVIKRLKGRVCRDSHQWSYQATHYIAPDPIRRTEKFFAATASGRWILKTDFLTASSQAGKFMPEEPYEWHKNGLSEDGAINMEAPRKWRLLKERTGHGALYGMRIVVYGDCIAPPLDTLKRVVKAGDGTILATSPPYTRFLGTGIDYAIVSPGMPRVDLWVQEFLKHEIPCVVADYLVEYVCKPGFSLERHVLYGTHTWAERSFAKLQSRAEEIIEELIAPEDGNDNDITCQVCGSRDRGDVMLICGDESGSVGCGIGTHIDCCDPPLTDVPEEDWFCPKCSSTKNCSNNPRKKKKGALSLSKGK. 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06974 1021 Gene3D BRCT domain 695 811 IPR036420 -
Seca7g06974 1021 MobiDBLite consensus disorder prediction 1002 1021 - -
Seca7g06974 1021 CDD BRCT_TopBP1_rpt7 702 775 - -
Seca7g06974 1021 Pfam BRCA1 C Terminus (BRCT) domain 706 770 IPR001357 -
Seca7g06974 1021 MobiDBLite consensus disorder prediction 429 458 - -
Seca7g06974 1021 Pfam PHD-finger 947 999 IPR019787 -
Seca7g06974 1021 MobiDBLite consensus disorder prediction 379 409 - -
Seca7g06974 1021 MobiDBLite consensus disorder prediction 526 574 - -
Seca7g06974 1021 MobiDBLite consensus disorder prediction 120 159 - -
Seca7g06974 1021 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 579 1012 IPR044254 -
Seca7g06974 1021 MobiDBLite consensus disorder prediction 660 693 - -
Seca7g06974 1021 MobiDBLite consensus disorder prediction 44 94 - -
Seca7g06974 1021 SMART PHD_3 946 998 IPR001965 -
Seca7g06974 1021 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 911 1013 IPR013083 -
Seca7g06974 1021 MobiDBLite consensus disorder prediction 1005 1021 - -
Seca7g06974 1021 Gene3D BRCT domain 813 910 IPR036420 -
Seca7g06974 1021 SUPERFAMILY BRCT domain 702 789 IPR036420 -
Seca7g06974 1021 MobiDBLite consensus disorder prediction 575 589 - -
Seca7g06974 1021 MobiDBLite consensus disorder prediction 44 64 - -
Seca7g06974 1021 SMART BRCT_7 694 775 IPR001357 -
Seca7g06974 1021 SMART BRCT_7 813 900 IPR001357 -
Seca7g06974 1021 MobiDBLite consensus disorder prediction 1 31 - -
Seca7g06974 1021 MobiDBLite consensus disorder prediction 354 477 - -
Seca7g06974 1021 MobiDBLite consensus disorder prediction 662 693 - -
Seca7g06974 1021 MobiDBLite consensus disorder prediction 526 611 - -
Seca7g06974 1021 ProSiteProfiles BRCT domain profile. 703 785 IPR001357 -
Seca7g06974 1021 SUPERFAMILY FYVE/PHD zinc finger 937 1004 IPR011011 -
Seca7g06974 1021 ProSiteProfiles Zinc finger PHD-type profile. 944 1000 IPR019787 -
Seca7g06974 1021 MobiDBLite consensus disorder prediction 131 147 - -
Seca7g06974 1021 MobiDBLite consensus disorder prediction 591 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06974 Seca-Chr7 172419514 172425748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06974 623 928 Core DNA Replication Machinery Family AT4G02110 58.621 3.97e-123 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca7g06974 BRCT 1.7e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06974 K10728 - gmx:100783461 848.966