Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06966 ATGGGAGAGGTTGTGTTGCTCGTTGATGATTTGAAATCACTTTCTGGGATTTCTCGATGTAGAATATGTCATGAAGAAGAATTCGAAAGCTCCAAAACCTTGGAAGCTCCTTGTGCTTGTTCTGGGACCGTTAAGTTTGCTCATAGAGATTGCATTCAGACATGGTGCAATGAGAAAGGAAATACAACTTGTGAAATATGTTTACAGCAATATGAACCTGGATATACAGCACCTCCAAAAAAATCTCAAATATCTGATGCCGCAATGACCATTAGAGAAAGCCTGCAAATTTCAATGCTGGAGCAAGAACCATTAAACACAAGAATAGTGGGTATAGTTGAAGGAGTAACAATAGAAAACAATTACTCTGAATGCACCTATGCTGCAGATAGAAGCGCGTCTCTCTGTCGATCACTGGCTTTAGCTTTTACTCTCATTTTGCTTGTAAGACATCTTTTCGCTCTGCTTACAAGTGGAATGGAAGATTATCCATTTACAATTCTTACAGTCTTTATGCTAAGGGCCAGTGGAATTATTATACCCATGTACATAATTATGAGGACTGTTGGAGCCATTCATAAGAGTATTAAGCGCCAGAATTATCAGGTTTCAAAGTTTGATTCTGACGATGACTCATCAATGACTGGTGGAGATGATGAAGAAAATGAGACACCACATGATGCAATTTTAAGACATTCATGA 702 0.3846 MGEVVLLVDDLKSLSGISRCRICHEEEFESSKTLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYTAPPKKSQISDAAMTIRESLQISMLEQEPLNTRIVGIVEGVTIENNYSECTYAADRSASLCRSLALAFTLILLVRHLFALLTSGMEDYPFTILTVFMLRASGIIIPMYIIMRTVGAIHKSIKRQNYQVSKFDSDDDSSMTGGDDEENETPHDAILRHS. 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06966 233 Pfam Protein of unknown function (DUF3675) 73 189 IPR022143 -
Seca7g06966 233 SUPERFAMILY RING/U-box 19 72 - -
Seca7g06966 233 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Seca7g06966 233 CDD RING_CH-C4HC3_MARCH 20 67 - -
Seca7g06966 233 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Seca7g06966 233 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 17 199 IPR033275 -
Seca7g06966 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 77 IPR013083 -
Seca7g06966 233 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Seca7g06966 233 SMART ringv_2 19 68 IPR011016 GO:0008270
Seca7g06966 233 MobiDBLite consensus disorder prediction 206 233 - -
Seca7g06966 233 MobiDBLite consensus disorder prediction 219 233 - -
Seca7g06966 233 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06966 Seca-Chr7 172321382 172324810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06966 20 67 C3H Transcription Factor Family AT2G37950 44.898 2.01e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06966 - - gmx:100797029 382.489