Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06954 ATGCTCTTAAGAACGTCGCTTTTTGTCACCTTAGTGAATGTCCTTTCATTGGTGGAACTAGCAAACAAAATGAGCTGGCACTGGACTGATATGAAACTTGTTCCTCAGATGCTGAATATGCTTGACTCAAGTGTAGAGGAGAGAATTGCAGTTGTTATCATTGTTCTTCTCGGTCAACTTGGGAGGAATAATTTTATAAAGATGGGTGATGATAGTATTGATTTAACTACACCAACCAAAGGTTTAAATGATCCAGTTGATACGTTGGAGGAATGGGTTCCAAAGTGTGATGAAGAAATCAAACCTGTAGTTGGCAAAGTCTTTGATACTTTAGAACAAGGAGGGGACTTTTATCAAAGGTATGCACATACTGCTGGTTTTAGTGTACGCAAAGCAACTGAAACAAAAGATAAAAATGGAGAAACAAAGTGGAAATATTTTCTTTGCTCTAAAGAAGGCTTCAAATTAGAAACAAAAGAAGGTGTAACTGAGTTGCTTGTTGATGATAAAAAATTGCCTAAAACCAGACGAAGAAAACTAACAAGGGAAGGGTGTAATGCAAGGATTGTTTTTAAGAGGACACAAGAAGGAAAATATGAAGTGGTGCGATTTCATGAAGGTCATACACATGCGTTAGCTACACCTAAAAAGAAGCAGTTCTTAAGATCTGCAAGGAGTATAAATAATGTTCATAAGAATTTATTACATTGTTATAATAGAGCTAATGTAGGCCCTTCAAAAGTGTATCAATTATTGAAAGAGCAGGTTGGGAGTTATGATAGTATAGGATGCACAAAGAGAGATCTCCAAAATTATTCTAGAGACTTGAAAGAGTTAATCAAAGACTCTGATGCACATATGTTTCTTGATAATTTTAGGAGAAAAAATGAGATGAACCACTCTTTTTATTATGACTATGAGGTTGATAATGAAGGGAGATTGAAATATGTGTTTTGGGCAGATGGTCTTTGTCGAAAAAATTACTCTTTGTTTGGTGATGTCATTTCATTTGATACAACATACAATACAAATAAATATTGTATGATTTTTGCACCATTCACTGGCATAAATCATCATAGGCAGAGCATAACTTTTGGGGCTGCCTTCCTAGCAGATGAGAAAGTTGAATCATTTGAGTGGTTGTTTGAAACATTTTTGAAAGCAATGGGAGGGCATAAACCTATTGTGATTATAACAGACCAGGACCCAGCCATGAAAATTGCAATTGAGAAGGTTTTCACAGGTTCTTCTCATAGATTTTGCATGTGGCACATACTGAAAAAACTTTCAGAGAAGGTGGGTGTTTCCTTGAATTCCAATGCTGATTTTAACAGTCGTTTTAAGACCTGTGTTTGGAATTCAGAGTCTCCAGATGAATTTGAATTGACTTGGAAAGCTATCATTATTGATTTCAAGTTAGAAGAAAATGGTTGGCTTTCACAAATGTATGACATGCGAAGTATGTGGATACCGGCTTATTTCAAAAGTATTTTTCTAGCTGGAATTTTGAGAACAACCTCAAGATCCGAGAGTGAAAATTCCTTCTTTGGTAATTACTTGAATAAGAACCTTAGTTTGGTGGAGTTTTGGATGAGATTTGATTCTGCACTAGAAGCACAGAGGCATAATGAATTACTTGCAGATAATGATACACTTCATTCTATGCCCGAATTGAAGATGCATAAGGATATAGAGAAACATGGCAGAGAAGTTTACACTCATCAAAATTTTTACATATTTCAAGGTGAGTTATGGAGTGCATGTGTGGATTGTGGGGTTGAAGAAACAAAAGAGGATAATGGGCAATTATTAATTTTTATACTTGAGCAGCTTGTGGTTAATGGCAACAAAGTGAGCAAACATCGGAAAGTTGTTTACAATCCTTCCAATCATATTGCACATTGTTCATGTAAAATGTTTGAATCTGAAGGCATGCCATGTCGACATATCCTTTTTGTATTAAAGGGTAAAGGCTTGAGTGAAATCCCAAGTTATTACATTATTAATAGATGGACCAAATTGGCAACTAGTACTCCAATTTTTTATTATGATGGCAATGTATTGGAGGCATGTTCCAAATTGGAAAGTGAAAGCAAGTTAATTTCTGATGCATGGGCAAAATTATTTAAATGCATGCATTTGGCTGGTACATGTAAAGATAAACTACTCCTTGTCATAAATGAAGCTTCTAGTATTGAAATGAAATTGACTAAGATGAAAGGTGATGTTGGAGCAAGCAAGTTGAATGAATTAGAGTCATTTGTTGGCTCCACTGTACCAAAGAATGTTGACATTCTTCCTCCTCAACCTTCAAATACCAAAGGATGTGGAAAACGGATCAAGGGGGGAAAGGAGAAGGCAATGGAGCAACAACAAAAAAGAACGAGACTTTGTAAAACTTGCCGACAATTTTCATATCATGATAGTCGTAATTGTCCCACAAAATCCTCTTCCTAA 2457 0.3569 MLLRTSLFVTLVNVLSLVELANKMSWHWTDMKLVPQMLNMLDSSVEERIAVVIIVLLGQLGRNNFIKMGDDSIDLTTPTKGLNDPVDTLEEWVPKCDEEIKPVVGKVFDTLEQGGDFYQRYAHTAGFSVRKATETKDKNGETKWKYFLCSKEGFKLETKEGVTELLVDDKKLPKTRRRKLTREGCNARIVFKRTQEGKYEVVRFHEGHTHALATPKKKQFLRSARSINNVHKNLLHCYNRANVGPSKVYQLLKEQVGSYDSIGCTKRDLQNYSRDLKELIKDSDAHMFLDNFRRKNEMNHSFYYDYEVDNEGRLKYVFWADGLCRKNYSLFGDVISFDTTYNTNKYCMIFAPFTGINHHRQSITFGAAFLADEKVESFEWLFETFLKAMGGHKPIVIITDQDPAMKIAIEKVFTGSSHRFCMWHILKKLSEKVGVSLNSNADFNSRFKTCVWNSESPDEFELTWKAIIIDFKLEENGWLSQMYDMRSMWIPAYFKSIFLAGILRTTSRSESENSFFGNYLNKNLSLVEFWMRFDSALEAQRHNELLADNDTLHSMPELKMHKDIEKHGREVYTHQNFYIFQGELWSACVDCGVEETKEDNGQLLIFILEQLVVNGNKVSKHRKVVYNPSNHIAHCSCKMFESEGMPCRHILFVLKGKGLSEIPSYYIINRWTKLATSTPIFYYDGNVLEACSKLESESKLISDAWAKLFKCMHLAGTCKDKLLLVINEASSIEMKLTKMKGDVGASKLNELESFVGSTVPKNVDILPPQPSNTKGCGKRIKGGKEKAMEQQQKRTRLCKTCRQFSYHDSRNCPTKSSS. 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06954 818 Pfam SWIM zinc finger 633 654 IPR007527 GO:0008270
Seca7g06954 818 Pfam FAR1 DNA-binding domain 116 213 IPR004330 -
Seca7g06954 818 Pfam MULE transposase domain 334 428 IPR018289 -
Seca7g06954 818 ProSiteProfiles Zinc finger SWIM-type profile. 622 658 IPR007527 GO:0008270
Seca7g06954 818 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 97 712 IPR031052 GO:0006355
Seca7g06954 818 SMART 26again6 633 660 IPR006564 GO:0008270
Seca7g06954 818 MobiDBLite consensus disorder prediction 770 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06954 Seca-Chr7 172208708 172213253 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca7g06954 FAR1 1.9e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06954 - - mtr:112420857 936.791